Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001612A_C01 KMC001612A_c01
(408 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO22610.1| unknown protein [Arabidopsis thaliana] gi|2839387... 71 4e-12
gb|AAF19541.1|AC007190_9 F23N19.20 [Arabidopsis thaliana] 67 5e-11
ref|NP_176473.1| hypothetical protein; protein id: At1g62850.1 [... 59 2e-08
gb|EAA12662.1| agCP11066 [Anopheles gambiae str. PEST] 40 0.005
ref|XP_221110.1| similar to immature colon carcinoma transcript ... 35 0.17
>gb|AAO22610.1| unknown protein [Arabidopsis thaliana] gi|28393873|gb|AAO42344.1|
unknown protein [Arabidopsis thaliana]
Length = 236
Score = 70.9 bits (172), Expect = 4e-12
Identities = 37/55 (67%), Positives = 44/55 (79%)
Frame = -3
Query: 262 SVS*LNTKVDMCFNVKNAYWLSDGVREKIIQMHDKNHIKMDEELEISSTRTRKQK 98
+V+ LNTKVDM FNVKNAYWLSD +REKI+ + +KN I D EL ISST+TR QK
Sbjct: 118 NVNKLNTKVDMRFNVKNAYWLSDRIREKIL-LTEKNRINKDGELVISSTKTRTQK 171
>gb|AAF19541.1|AC007190_9 F23N19.20 [Arabidopsis thaliana]
Length = 130
Score = 67.0 bits (162), Expect = 5e-11
Identities = 34/50 (68%), Positives = 40/50 (80%)
Frame = -3
Query: 250 LNTKVDMCFNVKNAYWLSDGVREKIIQMHDKNHIKMDEELEISSTRTRKQ 101
+NTKVDM FNVKNAYWLSD +REKI+ + +KN I D EL ISST+TR Q
Sbjct: 51 VNTKVDMRFNVKNAYWLSDRIREKIL-LTEKNRINKDGELVISSTKTRTQ 99
>ref|NP_176473.1| hypothetical protein; protein id: At1g62850.1 [Arabidopsis
thaliana]
Length = 109
Score = 58.5 bits (140), Expect = 2e-08
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = -3
Query: 232 MCFNVKNAYWLSDGVREKIIQMHDKNHIKMDEELEISSTRTRKQK 98
M FNVKNAYWLSD +REKI+ + +KN I D EL ISST+TR QK
Sbjct: 1 MRFNVKNAYWLSDRIREKIL-LTEKNRINKDGELVISSTKTRTQK 44
>gb|EAA12662.1| agCP11066 [Anopheles gambiae str. PEST]
Length = 211
Score = 40.4 bits (93), Expect = 0.005
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = -3
Query: 262 SVS*LNTKVDMCFNVKNAYWLSDGVREKIIQMHDKNHIKMDEELEISSTRTRKQK 98
+V+ ++TKVD+ F+++ A WL + R ++ Q+H K I D L I S TR Q+
Sbjct: 96 NVNTVSTKVDLRFHLETATWLPENTRNRLAQLH-KGRITKDGYLVIKSELTRSQQ 149
>ref|XP_221110.1| similar to immature colon carcinoma transcript 1 [Homo sapiens]
[Rattus norvegicus]
Length = 206
Score = 35.4 bits (80), Expect = 0.17
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = -3
Query: 262 SVS*LNTKVDMCFNVKNAYWLSDGVREKIIQMHDKNHIKMDEELEISSTRTRKQ 101
+V+ +N+K ++ F++ +A W+++ VR+KI H KN I EL ++S +R Q
Sbjct: 91 NVNKVNSKAEVRFHLASADWIAEPVRQKIALTH-KNKINKAGELVLTSESSRYQ 143
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,719,717
Number of Sequences: 1393205
Number of extensions: 6054801
Number of successful extensions: 13199
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 12966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13195
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
