Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001611A_C01 KMC001611A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, ... 48 8e-05
dbj|BAC42921.1| unknown protein [Arabidopsis thaliana] 48 8e-05
ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [... 45 7e-04
ref|NP_193970.1| putative protein; protein id: At4g22390.1 [Arab... 39 0.066
ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [... 39 0.066
>ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, supported by cDNA:
108003. [Arabidopsis thaliana]
gi|6862928|gb|AAF30317.1|AC018907_17 hypothetical
protein [Arabidopsis thaliana]
gi|21536665|gb|AAM60997.1| unknown [Arabidopsis
thaliana]
Length = 416
Score = 48.1 bits (113), Expect = 8e-05
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 6/159 (3%)
Frame = -2
Query: 595 GCVNWLANKFEPFEQLVIVSLDMRQEAYRLLSLPQGTSE----LPSAEIQVLGNCLCLFY 428
G ++W+ + Q V+V+ D++ E +R + +P + + + L LC+
Sbjct: 262 GAIHWVFTESR-HNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVN 320
Query: 427 DFKRTHFVAWKMSEYGLPESWTPLLTISYEHLRWDHRFYLNQWLICLCGDGHIFMLAKKQ 248
H W MSEYG +SW+ + + Y + +C + +L
Sbjct: 321 SCYDVHDDIWVMSEYGEAKSWSRIRI---------NLLYRSMKPLCSTKNDEEVLLELDG 371
Query: 247 KLVIIYNLSDNSVKYVELASNKL--WLDANDYVESLVSP 137
LV +YN N+ + + KL +AN YVESL+SP
Sbjct: 372 DLV-LYNFETNASSNLGICGVKLSDGFEANTYVESLISP 409
>dbj|BAC42921.1| unknown protein [Arabidopsis thaliana]
Length = 427
Score = 48.1 bits (113), Expect = 8e-05
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 6/159 (3%)
Frame = -2
Query: 595 GCVNWLANKFEPFEQLVIVSLDMRQEAYRLLSLPQGTSE----LPSAEIQVLGNCLCLFY 428
G ++W+ + Q V+V+ D++ E +R + +P + + + L LC+
Sbjct: 273 GAIHWVFTESR-HNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVN 331
Query: 427 DFKRTHFVAWKMSEYGLPESWTPLLTISYEHLRWDHRFYLNQWLICLCGDGHIFMLAKKQ 248
H W MSEYG +SW+ + + Y + +C + +L
Sbjct: 332 SCYDVHDDIWVMSEYGEAKSWSRIRI---------NLLYRSMKPLCSTKNDEEVLLELDG 382
Query: 247 KLVIIYNLSDNSVKYVELASNKL--WLDANDYVESLVSP 137
LV +YN N+ + + KL +AN YVESL+SP
Sbjct: 383 DLV-LYNFETNASSNLGICGVKLSDGFEANTYVESLISP 420
>ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [Arabidopsis
thaliana] gi|7487230|pir||T07648 hypothetical protein
T1P17.150 - Arabidopsis thaliana
gi|4725955|emb|CAB41726.1| putative protein [Arabidopsis
thaliana] gi|7267958|emb|CAB78299.1| putative protein
[Arabidopsis thaliana]
Length = 408
Score = 45.1 bits (105), Expect = 7e-04
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = -2
Query: 547 VIVSLDMRQEAYRLLSLPQGTSELP---SAEIQVLGNCLCLFYDFKRTHFVAWKMSEYGL 377
+IV D+ E + ++ P+ + +I VL CLCL ++ +++ W M EY +
Sbjct: 234 LIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNV 293
Query: 376 PESWTPLLTI 347
+SWT + T+
Sbjct: 294 RDSWTKVFTV 303
>ref|NP_193970.1| putative protein; protein id: At4g22390.1 [Arabidopsis thaliana]
gi|25407584|pir||D85256 hypothetical protein AT4g22390
[imported] - Arabidopsis thaliana
gi|5738370|emb|CAB52813.1| putative protein [Arabidopsis
thaliana] gi|7269085|emb|CAB79194.1| putative protein
[Arabidopsis thaliana]
Length = 394
Score = 38.5 bits (88), Expect = 0.066
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -2
Query: 544 IVSLDMRQEAYRLLSLPQGTSELPSAEIQVLGNCLCLFYDFKRTHFVAWKMSEYGLPESW 365
I+ D+ + +LS PQ + +I VL C+CL + +H W + EY +SW
Sbjct: 234 IIKYDLASDDIGVLSFPQELYIEDNMDIGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSW 293
Query: 364 TPLLTI 347
T L +
Sbjct: 294 TKLYRV 299
>ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [Arabidopsis
thaliana] gi|9294656|dbj|BAB03005.1|
gb|AAF30317.1~gene_id:F14O13.6~similar to unknown
protein [Arabidopsis thaliana]
gi|26449693|dbj|BAC41970.1| unknown protein [Arabidopsis
thaliana]
Length = 364
Score = 38.5 bits (88), Expect = 0.066
Identities = 40/157 (25%), Positives = 66/157 (41%), Gaps = 4/157 (2%)
Frame = -2
Query: 595 GCVNWLANKFEPFEQLVIVSLDMRQEAYRLLSLP----QGTSELPSAEIQVLGNCLCLFY 428
G +NW A I+S DM ++ ++ L P +G + +++ CL +
Sbjct: 220 GTLNWAATSSS--SSWTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLR---GCLSMVC 274
Query: 427 DFKRTHFVAWKMSEYGLPESWTPLLTISYEHLRWDHRFYLNQWLICLCGDGHIFMLAKKQ 248
K + W M E+G SW+ LL+I F W+ DG + +L +
Sbjct: 275 YCKGANADVWVMKEFGEVYSWSKLLSIP-----GLTDFVRPLWI----SDGLVVLLEFRS 325
Query: 247 KLVIIYNLSDNSVKYVELASNKLWLDANDYVESLVSP 137
L +YN S+ Y S DA Y++++VSP
Sbjct: 326 GLA-LYNCSNGRFHYPVSNSISGCRDAKVYLKTMVSP 361
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,439,918
Number of Sequences: 1393205
Number of extensions: 10728308
Number of successful extensions: 25349
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25334
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
