Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001609A_C01 KMC001609A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC39036.1| putative protein [Oryza sativa] 73 3e-12
ref|NP_567097.1| putative protein; protein id: At3g60260.1, supp... 66 2e-10
pir||T49221 hypothetical protein F27H5.50 - Arabidopsis thaliana... 66 2e-10
gb|AAL06934.1| At2g44770/F16B22.26 [Arabidopsis thaliana] gi|179... 65 7e-10
ref|NP_566027.1| expressed protein; protein id: At2g44770.1, sup... 65 7e-10
>emb|CAC39036.1| putative protein [Oryza sativa]
Length = 269
Score = 72.8 bits (177), Expect = 3e-12
Identities = 35/40 (87%), Positives = 38/40 (94%)
Frame = -2
Query: 551 ASYMDFNTVMKSTRRQLENELLLEDITRLEDVPSYKLLAR 432
A+YMDFNTVMKSTRRQLE ELLLEDI R+ED+PSYKLLAR
Sbjct: 230 ATYMDFNTVMKSTRRQLERELLLEDIQRIEDMPSYKLLAR 269
>ref|NP_567097.1| putative protein; protein id: At3g60260.1, supported by cDNA:
104796., supported by cDNA: gi_17473881, supported by
cDNA: gi_20148670 [Arabidopsis thaliana]
gi|17473882|gb|AAL38361.1| putative protein [Arabidopsis
thaliana] gi|20148671|gb|AAM10226.1| putative protein
[Arabidopsis thaliana] gi|21536589|gb|AAM60921.1|
unknown [Arabidopsis thaliana]
Length = 266
Score = 66.2 bits (160), Expect = 2e-10
Identities = 30/40 (75%), Positives = 37/40 (92%)
Frame = -2
Query: 551 ASYMDFNTVMKSTRRQLENELLLEDITRLEDVPSYKLLAR 432
ASYM+FNTVMKSTRRQLE E+++EDIT LED+PSY LL++
Sbjct: 227 ASYMEFNTVMKSTRRQLEREIMIEDITSLEDLPSYSLLSQ 266
>pir||T49221 hypothetical protein F27H5.50 - Arabidopsis thaliana
gi|7576202|emb|CAB87863.1| putative protein [Arabidopsis
thaliana]
Length = 250
Score = 66.2 bits (160), Expect = 2e-10
Identities = 30/40 (75%), Positives = 37/40 (92%)
Frame = -2
Query: 551 ASYMDFNTVMKSTRRQLENELLLEDITRLEDVPSYKLLAR 432
ASYM+FNTVMKSTRRQLE E+++EDIT LED+PSY LL++
Sbjct: 211 ASYMEFNTVMKSTRRQLEREIMIEDITSLEDLPSYSLLSQ 250
>gb|AAL06934.1| At2g44770/F16B22.26 [Arabidopsis thaliana]
gi|17981659|gb|AAL51113.1|AF458341_1 At2g44770/F16B22.26
[Arabidopsis thaliana]
Length = 266
Score = 64.7 bits (156), Expect = 7e-10
Identities = 31/38 (81%), Positives = 34/38 (88%)
Frame = -2
Query: 551 ASYMDFNTVMKSTRRQLENELLLEDITRLEDVPSYKLL 438
ASYM+FNTVMKSTRRQLE EL+LEDI LED+PSY LL
Sbjct: 227 ASYMEFNTVMKSTRRQLERELMLEDIMHLEDLPSYALL 264
>ref|NP_566027.1| expressed protein; protein id: At2g44770.1, supported by cDNA:
36996., supported by cDNA: gi_15810013, supported by
cDNA: gi_17981658 [Arabidopsis thaliana]
gi|20197031|gb|AAC27479.2| expressed protein
[Arabidopsis thaliana] gi|21593197|gb|AAM65146.1|
unknown [Arabidopsis thaliana]
Length = 266
Score = 64.7 bits (156), Expect = 7e-10
Identities = 31/38 (81%), Positives = 34/38 (88%)
Frame = -2
Query: 551 ASYMDFNTVMKSTRRQLENELLLEDITRLEDVPSYKLL 438
ASYM+FNTVMKSTRRQLE EL+LEDI LED+PSY LL
Sbjct: 227 ASYMEFNTVMKSTRRQLERELMLEDIMHLEDLPSYALL 264
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,073,013
Number of Sequences: 1393205
Number of extensions: 8725422
Number of successful extensions: 15848
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15840
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
