Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001607A_C01 KMC001607A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190422.1| putative protein; protein id: At3g48530.1, supp... 86 2e-22
gb|AAM64867.1| unknown [Arabidopsis thaliana] 84 4e-22
dbj|BAB86178.1| OJ1485_B09.7 [Oryza sativa (japonica cultivar-gr... 71 4e-18
ref|NP_178126.1| hypothetical protein; protein id: At1g80090.1 [... 50 1e-05
dbj|BAC42835.1| unknown protein [Arabidopsis thaliana] 50 1e-05
>ref|NP_190422.1| putative protein; protein id: At3g48530.1, supported by cDNA:
34151., supported by cDNA: gi_14596102, supported by
cDNA: gi_20148270 [Arabidopsis thaliana]
gi|11358447|pir||T46197 hypothetical protein T8P19.40 -
Arabidopsis thaliana gi|6523084|emb|CAB62342.1| putative
protein [Arabidopsis thaliana]
gi|6686786|emb|CAB64720.1| AKIN gamma [Arabidopsis
thaliana] gi|14596103|gb|AAK68779.1| putative protein
[Arabidopsis thaliana] gi|20148271|gb|AAM10026.1|
putative protein [Arabidopsis thaliana]
Length = 424
Score = 85.5 bits (210), Expect(2) = 2e-22
Identities = 45/74 (60%), Positives = 57/74 (76%), Gaps = 1/74 (1%)
Frame = -2
Query: 542 AVRTYLDKNKNASS-MSSEFITCKKYCTIKELIQLLDREKIHRVYVVDDDGNLQGLITLR 366
+VR +L+K + S+ + S I C K T+KELI +LD EKIHR+YVVDD GNL+GLITLR
Sbjct: 335 SVREHLEKCGDTSAPIMSGVIACTKNHTLKELILMLDAEKIHRIYVVDDFGNLEGLITLR 394
Query: 365 DIISRLVHEPAWLF 324
DII+RLVHEP+ F
Sbjct: 395 DIIARLVHEPSGYF 408
Score = 42.0 bits (97), Expect(2) = 2e-22
Identities = 17/21 (80%), Positives = 18/21 (84%)
Frame = -3
Query: 337 PHGYFGDFFDGVLPLPANSRV 275
P GYFGDFFDGV+PLP N RV
Sbjct: 404 PSGYFGDFFDGVMPLPENYRV 424
>gb|AAM64867.1| unknown [Arabidopsis thaliana]
Length = 424
Score = 84.0 bits (206), Expect(2) = 4e-22
Identities = 44/74 (59%), Positives = 57/74 (76%), Gaps = 1/74 (1%)
Frame = -2
Query: 542 AVRTYLDKNKNASS-MSSEFITCKKYCTIKELIQLLDREKIHRVYVVDDDGNLQGLITLR 366
+VR +L+K + S+ + S I C K T+KELI +LD EKIHR+YVVD+ GNL+GLITLR
Sbjct: 335 SVREHLEKCGDTSAPIMSGVIACTKNHTLKELILMLDAEKIHRIYVVDEFGNLEGLITLR 394
Query: 365 DIISRLVHEPAWLF 324
DII+RLVHEP+ F
Sbjct: 395 DIIARLVHEPSGYF 408
Score = 42.0 bits (97), Expect(2) = 4e-22
Identities = 17/21 (80%), Positives = 18/21 (84%)
Frame = -3
Query: 337 PHGYFGDFFDGVLPLPANSRV 275
P GYFGDFFDGV+PLP N RV
Sbjct: 404 PSGYFGDFFDGVMPLPENYRV 424
>dbj|BAB86178.1| OJ1485_B09.7 [Oryza sativa (japonica cultivar-group)]
Length = 435
Score = 71.2 bits (173), Expect(2) = 4e-18
Identities = 36/74 (48%), Positives = 48/74 (64%)
Frame = -2
Query: 545 TAVRTYLDKNKNASSMSSEFITCKKYCTIKELIQLLDREKIHRVYVVDDDGNLQGLITLR 366
TA + +++ +TCKK +IKE+I LD EK R+YVVD+ GNL GLITLR
Sbjct: 346 TAQEFIANARQSSGEKQMNIVTCKKEESIKEIIFKLDAEKRQRIYVVDEQGNLDGLITLR 405
Query: 365 DIISRLVHEPAWLF 324
DII++LV+EP F
Sbjct: 406 DIIAKLVYEPPGYF 419
Score = 41.2 bits (95), Expect(2) = 4e-18
Identities = 17/21 (80%), Positives = 18/21 (84%)
Frame = -3
Query: 337 PHGYFGDFFDGVLPLPANSRV 275
P GYFGDFF+GV PLP NSRV
Sbjct: 415 PPGYFGDFFNGVFPLPQNSRV 435
>ref|NP_178126.1| hypothetical protein; protein id: At1g80090.1 [Arabidopsis
thaliana]
Length = 402
Score = 50.4 bits (119), Expect = 1e-05
Identities = 21/51 (41%), Positives = 36/51 (70%)
Frame = -2
Query: 506 SSMSSEFITCKKYCTIKELIQLLDREKIHRVYVVDDDGNLQGLITLRDIIS 354
S+ E +TC T+ ++I ++ +++HRV+VVD +G LQGL++L DII+
Sbjct: 338 STPGRELVTCHVTSTLAQVIHMVTTKRVHRVWVVDQNGGLQGLVSLTDIIA 388
>dbj|BAC42835.1| unknown protein [Arabidopsis thaliana]
Length = 357
Score = 50.4 bits (119), Expect = 1e-05
Identities = 21/51 (41%), Positives = 36/51 (70%)
Frame = -2
Query: 506 SSMSSEFITCKKYCTIKELIQLLDREKIHRVYVVDDDGNLQGLITLRDIIS 354
S+ E +TC T+ ++I ++ +++HRV+VVD +G LQGL++L DII+
Sbjct: 293 STPGRELVTCHVTSTLAQVIHMVTTKRVHRVWVVDQNGGLQGLVSLTDIIA 343
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,998,631
Number of Sequences: 1393205
Number of extensions: 8708742
Number of successful extensions: 18696
Number of sequences better than 10.0: 371
Number of HSP's better than 10.0 without gapping: 17973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18678
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
