Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001604A_C01 KMC001604A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568410.1| Expressed protein; protein id: At5g22000.1, sup... 60 3e-08
dbj|BAC42950.1| putative RING-H2 finger protein RHF2a [Arabidops... 52 4e-06
gb|AAO24905.1| putative zinc finger protein [Oryza sativa (japon... 50 2e-05
ref|NP_193158.1| RING-H2 finger protein RHF1a; protein id: At4g1... 32 4.4
dbj|BAC42605.1| putative RING-H2 finger protein RHF1a [Arabidops... 32 4.4
>ref|NP_568410.1| Expressed protein; protein id: At5g22000.1, supported by cDNA:
gi_11762135, supported by cDNA: gi_18491184, supported
by cDNA: gi_3790586 [Arabidopsis thaliana]
gi|11358784|pir||T51854 RING-H2 finger protein RHF2a
[imported] - Arabidopsis thaliana
gi|3790587|gb|AAC69856.1| RING-H2 finger protein RHF2a
[Arabidopsis thaliana]
gi|11762136|gb|AAG40346.1|AF324994_1 CIC7E11
[Arabidopsis thaliana] gi|13374859|emb|CAC34493.1|
RING-H2 finger protein RHF2a [Arabidopsis thaliana]
gi|26983856|gb|AAN86180.1| unknown protein [Arabidopsis
thaliana]
Length = 375
Score = 59.7 bits (143), Expect = 3e-08
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = -1
Query: 583 VRREVNAGIATVSRMMERLETRDNRSSSNSAPTNLEDGSVQGSNDQHLTDTEVD-GLVRD 407
V+REV+AGIATVSRMMERLETR+N S ++ +++ + +N++H D V +
Sbjct: 302 VKREVSAGIATVSRMMERLETRENSRPSTASVSDVSENHTPETNNEHNRAAAGDEHSVNE 361
Query: 406 NNTKASCAAGSSSN 365
K +CA GS S+
Sbjct: 362 RGVKETCATGSGSS 375
>dbj|BAC42950.1| putative RING-H2 finger protein RHF2a [Arabidopsis thaliana]
Length = 353
Score = 52.4 bits (124), Expect = 4e-06
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = -1
Query: 583 VRREVNAGIATVSRMMERLETRDNRSSSNSAPTNLEDGSVQGSNDQH 443
V+REV+AGIATVSRMMERLETR+N S ++ +++ + +N++H
Sbjct: 302 VKREVSAGIATVSRMMERLETRENSRPSTASVSDVSENHTPETNNEH 348
>gb|AAO24905.1| putative zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 336
Score = 50.4 bits (119), Expect = 2e-05
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = -1
Query: 583 VRREVNAGIATVSRMMERLETRDNRSSSNSAPTNLEDGSVQGSNDQHLTDTEVDGLVRDN 404
VRREVNAGIA VSRMMERLET+D+ + SA S +N+Q +V +
Sbjct: 267 VRREVNAGIAAVSRMMERLETKDD--TGPSAVPAASACSPSDANNQRTVSPNHAAVVNET 324
Query: 403 NTKASCAAGSSS 368
++ +CA+GS S
Sbjct: 325 SS-TTCASGSGS 335
>ref|NP_193158.1| RING-H2 finger protein RHF1a; protein id: At4g14220.1 [Arabidopsis
thaliana] gi|25360953|pir||C85155 RING-H2 finger protein
RHF1a [imported] - Arabidopsis thaliana
gi|5280989|emb|CAB46003.1| RING-H2 finger protein RHF1a
[Arabidopsis thaliana] gi|7268127|emb|CAB78464.1|
RING-H2 finger protein RHF1a [Arabidopsis thaliana]
Length = 376
Score = 32.3 bits (72), Expect = 4.4
Identities = 18/44 (40%), Positives = 26/44 (58%)
Frame = -1
Query: 583 VRREVNAGIATVSRMMERLETRDNRSSSNSAPTNLEDGSVQGSN 452
V+RE+NAGIA V+RM+ER++ R SA + + G N
Sbjct: 297 VQREMNAGIAGVARMIERMDFSSKR-FGGSAHVSTSTATASGFN 339
>dbj|BAC42605.1| putative RING-H2 finger protein RHF1a [Arabidopsis thaliana]
Length = 371
Score = 32.3 bits (72), Expect = 4.4
Identities = 18/44 (40%), Positives = 26/44 (58%)
Frame = -1
Query: 583 VRREVNAGIATVSRMMERLETRDNRSSSNSAPTNLEDGSVQGSN 452
V+RE+NAGIA V+RM+ER++ R SA + + G N
Sbjct: 297 VQREMNAGIAGVARMIERMDFSSKR-FGGSAHVSTSTATASGFN 339
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,974,035
Number of Sequences: 1393205
Number of extensions: 9660062
Number of successful extensions: 19840
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19830
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
