Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001601A_C01 KMC001601A_c01
(763 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO45179.1| transcription factor Myb1 [Malus xiaojinensis] 57 4e-07
emb|CAB97477.2| related to C2H2 zinc finger transcription factor... 34 2.0
pir||T51024 related to C2H2 zinc finger transcription factor D-S... 34 2.0
gb|AAH36672.1| Unknown (protein for MGC:33636) [Homo sapiens] 33 4.4
gb|AAH40521.1| Unknown (protein for MGC:39510) [Homo sapiens] 33 4.4
>gb|AAO45179.1| transcription factor Myb1 [Malus xiaojinensis]
Length = 302
Score = 56.6 bits (135), Expect = 4e-07
Identities = 31/77 (40%), Positives = 47/77 (60%)
Frame = -3
Query: 761 NMKPNVPTNLFHPIPVAPDHKSPAMSDITSSSSSAVEPPTLSLGLSFSSDQRQTSSRHPA 582
N + + L HP+ + + A+SD+ +S++ + TL+L LS S D R+ SSRH A
Sbjct: 228 NPENSTSAKLVHPVALHSAPHATAISDLNLNSTT--DASTLTLNLSLSMDSREPSSRHSA 285
Query: 581 LHSMPRFNNGDSIISVA 531
+M F+NGDS+ISVA
Sbjct: 286 FETMQGFSNGDSMISVA 302
>emb|CAB97477.2| related to C2H2 zinc finger transcription factor D-Sp1 [Neurospora
crassa] gi|28925187|gb|EAA34269.1| hypothetical protein
[Neurospora crassa]
Length = 606
Score = 34.3 bits (77), Expect = 2.0
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -3
Query: 695 PAMSDITSSSSSAVEPPTLSLGLSFSSDQRQTS--SRHPALHSMPRFNNGDS 546
PA + T++S+SA PP S GLS +S +R+T+ +P S P+ N DS
Sbjct: 372 PATTTTTTASASASLPPRNSFGLSSASRRRRTTGGGSNPNTSSTPQSPNTDS 423
>pir||T51024 related to C2H2 zinc finger transcription factor D-Sp1 [imported] -
Neurospora crassa
Length = 770
Score = 34.3 bits (77), Expect = 2.0
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -3
Query: 695 PAMSDITSSSSSAVEPPTLSLGLSFSSDQRQTS--SRHPALHSMPRFNNGDS 546
PA + T++S+SA PP S GLS +S +R+T+ +P S P+ N DS
Sbjct: 536 PATTTTTTASASASLPPRNSFGLSSASRRRRTTGGGSNPNTSSTPQSPNTDS 587
>gb|AAH36672.1| Unknown (protein for MGC:33636) [Homo sapiens]
Length = 832
Score = 33.1 bits (74), Expect = 4.4
Identities = 17/48 (35%), Positives = 26/48 (53%)
Frame = -3
Query: 719 PVAPDHKSPAMSDITSSSSSAVEPPTLSLGLSFSSDQRQTSSRHPALH 576
P++ KSP +S S+S+ + P +SL S S++ S HPA H
Sbjct: 163 PLSSPSKSPILSSSASTSTLSSAKPFMSLVKSLSTEVEPKESPHPARH 210
>gb|AAH40521.1| Unknown (protein for MGC:39510) [Homo sapiens]
Length = 1134
Score = 33.1 bits (74), Expect = 4.4
Identities = 17/48 (35%), Positives = 26/48 (53%)
Frame = -3
Query: 719 PVAPDHKSPAMSDITSSSSSAVEPPTLSLGLSFSSDQRQTSSRHPALH 576
P++ KSP +S S+S+ + P +SL S S++ S HPA H
Sbjct: 163 PLSSPSKSPILSSSASTSTLSSAKPFMSLVKSLSTEVEPKESPHPARH 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 693,342,056
Number of Sequences: 1393205
Number of extensions: 15827500
Number of successful extensions: 46642
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 42913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46528
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 36974710344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
