Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001600A_C01 KMC001600A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568148.1| E2, ubiquitin-conjugating enzyme, putative; pro... 51 1e-05
prf||2202353A phospholipase A2:ISOTYPE=V 35 0.74
sp|P70090|PA25_TRIGA Phospholipase A2 isozyme V precursor (Phosp... 35 0.74
dbj|BAA06553.1| phospholipase A2 precursor [Trimeresurus gramineus] 35 0.74
pir||T12203 transcription factor Vp1 - common ice plant gi|32191... 35 0.96
>ref|NP_568148.1| E2, ubiquitin-conjugating enzyme, putative; protein id:
At5g05080.1, supported by cDNA: 41386., supported by
cDNA: gi_16226746 [Arabidopsis thaliana]
gi|10178047|dbj|BAB11530.1| contains similarity to
ubiquitin conjugating enzyme~gene_id:MUG13.6
[Arabidopsis thaliana]
gi|16226747|gb|AAL16250.1|AF428320_1 AT5g05080/MUG13_6
[Arabidopsis thaliana] gi|21436009|gb|AAM51582.1|
AT5g05080/MUG13_6 [Arabidopsis thaliana]
gi|21593685|gb|AAM65652.1| E2, ubiquitin-conjugating
enzyme, putative [Arabidopsis thaliana]
Length = 251
Score = 50.8 bits (120), Expect = 1e-05
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = -3
Query: 547 TRLCFGADIKTTPQSA-ALPLPLPPLSSTTATRGNNQEQVAVVMTEKIVNGSTAAAMAVS 371
T L G TP +A A+P + + T T +Q+ VA V+ A + S
Sbjct: 171 TALNVGQTNNETPGAATAIPSSMTDIKRVT-TSAQDQQHVANVVV----------AASAS 219
Query: 370 APAAPQRKEGGQAKAQADQKKIDARKKSLKRL 275
Q++E G AK QAD+KK+DARKKSLKRL
Sbjct: 220 VVTTTQKREAGLAKVQADKKKVDARKKSLKRL 251
Score = 33.9 bits (76), Expect = 1.6
Identities = 16/18 (88%), Positives = 17/18 (93%)
Frame = -2
Query: 599 KSGAISESTTALNVDQTN 546
K+GAISESTTALNV QTN
Sbjct: 162 KTGAISESTTALNVGQTN 179
>prf||2202353A phospholipase A2:ISOTYPE=V
Length = 122
Score = 35.0 bits (79), Expect = 0.74
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 29/110 (26%)
Frame = -2
Query: 488 PITTIVLNHCN------KRKQSGTGSCCYD*ENR*WFHCCCYGSFCSCCTTKER---RWT 336
P T+ L CN ++ + T CCY H CCY C K+R W
Sbjct: 17 PATSYGLYGCNCGPGGRRKPKDATDRCCY-------VHKCCYKKLTDCDPIKDRYSYSWV 69
Query: 335 SKSSGRPEEDRCKKE--------------------KFKKIVIKLFNN*TS 246
+K+ E++ C KE K KKI +KLF TS
Sbjct: 70 NKAIVCGEDNPCLKEMCECDKAVAICFRENLDTYDKKKKINLKLFCKKTS 119
>sp|P70090|PA25_TRIGA Phospholipase A2 isozyme V precursor (Phosphatidylcholine
2-acylhydrolase) (PLA2-V) gi|1644279|dbj|BAA06559.1|
phospholipase A2 [Trimeresurus gramineus]
Length = 138
Score = 35.0 bits (79), Expect = 0.74
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 29/110 (26%)
Frame = -2
Query: 488 PITTIVLNHCN------KRKQSGTGSCCYD*ENR*WFHCCCYGSFCSCCTTKER---RWT 336
P T+ L CN ++ + T CCY H CCY C K+R W
Sbjct: 33 PATSYGLYGCNCGPGGRRKPKDATDRCCY-------VHKCCYKKLTDCDPIKDRYSYSWV 85
Query: 335 SKSSGRPEEDRCKKE--------------------KFKKIVIKLFNN*TS 246
+K+ E++ C KE K KKI +KLF TS
Sbjct: 86 NKAIVCGEDNPCLKEMCECDKAVAICFRENLDTYDKKKKINLKLFCKKTS 135
>dbj|BAA06553.1| phospholipase A2 precursor [Trimeresurus gramineus]
Length = 132
Score = 35.0 bits (79), Expect = 0.74
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 29/110 (26%)
Frame = -2
Query: 488 PITTIVLNHCN------KRKQSGTGSCCYD*ENR*WFHCCCYGSFCSCCTTKER---RWT 336
P T+ L CN ++ + T CCY H CCY C K+R W
Sbjct: 27 PATSYGLYGCNCGPGGRRKPKDATDRCCY-------VHKCCYKKLTDCDPIKDRYSYSWV 79
Query: 335 SKSSGRPEEDRCKKE--------------------KFKKIVIKLFNN*TS 246
+K+ E++ C KE K KKI +KLF TS
Sbjct: 80 NKAIVCGEDNPCLKEMCECDKAVAICFRENLDTYDKKKKINLKLFCKKTS 129
>pir||T12203 transcription factor Vp1 - common ice plant
gi|3219155|dbj|BAA28779.1| transcription factor Vp1
[Mesembryanthemum crystallinum]
Length = 790
Score = 34.7 bits (78), Expect = 0.96
Identities = 18/74 (24%), Positives = 35/74 (46%)
Frame = -3
Query: 523 IKTTPQSAALPLPLPPLSSTTATRGNNQEQVAVVMTEKIVNGSTAAAMAVSAPAAPQRKE 344
+ ++ S++ P P P +ST + + + + + + STA +M + AP PQ+
Sbjct: 86 MSSSSSSSSAPAPKKPFASTATSSSASTATSSSWVADHEPSSSTAVSMDLVAPPPPQQSG 145
Query: 343 GGQAKAQADQKKID 302
GG A + +D
Sbjct: 146 GGGAGGEMGSMSVD 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,783,805
Number of Sequences: 1393205
Number of extensions: 11144285
Number of successful extensions: 41966
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 38090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41498
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
