Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001599A_C01 KMC001599A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL84981.1| At1g07010/F10K1_19 [Arabidopsis thaliana] 98 6e-20
ref|NP_172182.2| unknown protein; protein id: At1g07010.1, suppo... 98 6e-20
pir||H86204 probable phosphoesterase (EC 3.1.-.-) F10K1.27 [simi... 98 6e-20
ref|NP_564053.1| Expressed protein; protein id: At1g18480.1, sup... 42 0.006
gb|AAM60987.1| unknown [Arabidopsis thaliana] 42 0.006
>gb|AAL84981.1| At1g07010/F10K1_19 [Arabidopsis thaliana]
Length = 389
Score = 98.2 bits (243), Expect = 6e-20
Identities = 47/62 (75%), Positives = 51/62 (81%)
Frame = -3
Query: 537 VGHTPQTIGVNCKYNCSIWRIDVGMSSGVLNSRPEVLEIIDDKARVIKSKRDRGSELQAA 358
VGHTPQ GVNC+Y C IWR+DVGMSSGVL+SRPEVLEI DKARVI+S RDR ELQ A
Sbjct: 327 VGHTPQLSGVNCEYGCGIWRVDVGMSSGVLDSRPEVLEIRGDKARVIRSNRDRLHELQVA 386
Query: 357 AY 352
Y
Sbjct: 387 DY 388
>ref|NP_172182.2| unknown protein; protein id: At1g07010.1, supported by cDNA:
gi_19310494 [Arabidopsis thaliana]
gi|22531180|gb|AAM97094.1| unknown protein [Arabidopsis
thaliana]
Length = 389
Score = 98.2 bits (243), Expect = 6e-20
Identities = 47/62 (75%), Positives = 51/62 (81%)
Frame = -3
Query: 537 VGHTPQTIGVNCKYNCSIWRIDVGMSSGVLNSRPEVLEIIDDKARVIKSKRDRGSELQAA 358
VGHTPQ GVNC+Y C IWR+DVGMSSGVL+SRPEVLEI DKARVI+S RDR ELQ A
Sbjct: 327 VGHTPQLSGVNCEYGCGIWRVDVGMSSGVLDSRPEVLEIRGDKARVIRSNRDRLHELQVA 386
Query: 357 AY 352
Y
Sbjct: 387 DY 388
>pir||H86204 probable phosphoesterase (EC 3.1.-.-) F10K1.27 [similarity] -
Arabidopsis thaliana
gi|8954044|gb|AAF82218.1|AC067971_26 Contains similarity
to serine-threonine protein phosphatase - fission yeast
from Schizosaccharomyces pombe gb|AL031179. ESTs
gb|T88261, gb|T04457, gb|AA585938, gb|AA650911 and
gb|AA598061 come from this gene. [Arabidopsis thaliana]
Length = 415
Score = 98.2 bits (243), Expect = 6e-20
Identities = 47/62 (75%), Positives = 51/62 (81%)
Frame = -3
Query: 537 VGHTPQTIGVNCKYNCSIWRIDVGMSSGVLNSRPEVLEIIDDKARVIKSKRDRGSELQAA 358
VGHTPQ GVNC+Y C IWR+DVGMSSGVL+SRPEVLEI DKARVI+S RDR ELQ A
Sbjct: 353 VGHTPQLSGVNCEYGCGIWRVDVGMSSGVLDSRPEVLEIRGDKARVIRSNRDRLHELQVA 412
Query: 357 AY 352
Y
Sbjct: 413 DY 414
>ref|NP_564053.1| Expressed protein; protein id: At1g18480.1, supported by cDNA:
107675., supported by cDNA: gi_16226289 [Arabidopsis
thaliana] gi|16226290|gb|AAL16125.1|AF428293_1
At1g18480/F15H18_1 [Arabidopsis thaliana]
gi|23308175|gb|AAN18057.1| At1g18480/F15H18_1
[Arabidopsis thaliana]
Length = 391
Score = 41.6 bits (96), Expect = 0.006
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -3
Query: 537 VGHTPQTIGVNCKYNCSIWRIDVGMSSGVLNSRPEVLEI-IDDKARVIKS 391
+GHT Q G+N N RIDVGMS G + PEVLEI D R++ S
Sbjct: 308 MGHTIQDAGINGVCNDKAIRIDVGMSKGCADGLPEVLEIRRDSGVRIVTS 357
>gb|AAM60987.1| unknown [Arabidopsis thaliana]
Length = 391
Score = 41.6 bits (96), Expect = 0.006
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -3
Query: 537 VGHTPQTIGVNCKYNCSIWRIDVGMSSGVLNSRPEVLEI-IDDKARVIKS 391
+GHT Q G+N N RIDVGMS G + PEVLEI D R++ S
Sbjct: 308 MGHTIQDAGINGVCNDKAIRIDVGMSKGCADGLPEVLEIRRDSGVRIVTS 357
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,329,482
Number of Sequences: 1393205
Number of extensions: 7639900
Number of successful extensions: 17570
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17565
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
