Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001598A_C01 KMC001598A_c01
(436 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187515.1| hypothetical protein; protein id: At3g09030.1 [... 81 3e-15
ref|NP_198949.1| putative protein; protein id: At5g41330.1 [Arab... 40 0.009
dbj|BAC15824.1| hypothetical protein~similar to Arabidopsis thal... 36 0.095
dbj|BAC42077.1| unknown protein [Arabidopsis thaliana] 33 1.1
gb|AAD13601.1| cytochrome c oxidase III [Gambelia wislizenii] 32 1.4
>ref|NP_187515.1| hypothetical protein; protein id: At3g09030.1 [Arabidopsis
thaliana] gi|5923668|gb|AAD56319.1|AC009326_6
hypothetical protein [Arabidopsis thaliana]
gi|6403485|gb|AAF07825.1|AC010871_1 hypothetical protein
[Arabidopsis thaliana]
Length = 460
Score = 80.9 bits (198), Expect = 3e-15
Identities = 42/71 (59%), Positives = 51/71 (71%)
Frame = -3
Query: 434 GELEVWSRLREAGSENAEGFYRRNFVDKRGDSERGVIKKIEGGGDRLFVSREGVEGIEVW 255
G LEVWS ++E S + RRNFVDK DS+RG+I KIE GGDRLFVSRE +EG+EVW
Sbjct: 391 GALEVWSSVKEKTS--GDPIRRRNFVDKEDDSKRGMISKIEAGGDRLFVSRECMEGVEVW 448
Query: 254 ESSHSVKSISV 222
E+S +SV
Sbjct: 449 ETSSFSGVVSV 459
>ref|NP_198949.1| putative protein; protein id: At5g41330.1 [Arabidopsis thaliana]
gi|9758042|dbj|BAB08505.1|
gb|AAD56319.1~gene_id:MYC6.4~similar to unknown protein
[Arabidopsis thaliana]
Length = 458
Score = 39.7 bits (91), Expect = 0.009
Identities = 21/66 (31%), Positives = 36/66 (53%), Gaps = 6/66 (9%)
Frame = -3
Query: 428 LEVWSRLREAGSENA------EGFYRRNFVDKRGDSERGVIKKIEGGGDRLFVSREGVEG 267
+E+WS + NA E +R+N + K DS I + GG+R+FV+R+ +
Sbjct: 386 IELWSEVITGLVGNASRDVLEERVFRKNSLGKLADSGENKITGLAFGGNRMFVTRKDQQS 445
Query: 266 IEVWES 249
++VW+S
Sbjct: 446 VQVWQS 451
>dbj|BAC15824.1| hypothetical protein~similar to Arabidopsis thaliana chromosoem 5,
At5g41330 [Oryza sativa (japonica cultivar-group)]
Length = 481
Score = 36.2 bits (82), Expect = 0.095
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Frame = -3
Query: 434 GELEVWSRLREAGSENAEGFYRRN-------FVDKRGDSERGVIKKIE-----GGGDRLF 291
GE+EVW+++ A + RRN FV G V +K + GG R+
Sbjct: 399 GEVEVWTQVELAQEAGGKKLMRRNWVGNGPSFVIAGGSGHESVKEKTKIVSWAFGGSRMA 458
Query: 290 VSREGVEGIEVWESSHSVKSIS 225
++R+ IEVW+S+ + S +
Sbjct: 459 LARDDKRSIEVWDSAPAAISFN 480
>dbj|BAC42077.1| unknown protein [Arabidopsis thaliana]
Length = 421
Score = 32.7 bits (73), Expect = 1.1
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = -3
Query: 434 GELEVWSRLREAGSENAEGFYRRNFVDKRGDSE 336
G LEVWS ++E S + RRNFVDK DS+
Sbjct: 391 GALEVWSSVKEKTS--GDPIRRRNFVDKEDDSK 421
>gb|AAD13601.1| cytochrome c oxidase III [Gambelia wislizenii]
Length = 141
Score = 32.3 bits (72), Expect = 1.4
Identities = 18/43 (41%), Positives = 23/43 (52%)
Frame = +1
Query: 244 WELSHTSIPSTPSLLTNNLSPPPSIFLITPLSESPLLSTKFLL 372
W L H+S+ TP L PP +F + P E PLL+T LL
Sbjct: 3 WALXHSSLAPTPEL--GGCWPPSGVFPLNPF-EVPLLNTAVLL 42
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,999,683
Number of Sequences: 1393205
Number of extensions: 8803856
Number of successful extensions: 26493
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 25159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26443
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
