Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001590A_C01 KMC001590A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC42087.1| putative NAC domain protein [Solanum tuberosum] 272 1e-72
gb|AAN41296.1| unknown protein [Arabidopsis thaliana] 272 2e-72
gb|AAM34766.1|AF509866_1 nam-like protein 3 [Petunia x hybrida] 269 1e-71
gb|AAM34773.1|AF509873_1 nam-like protein 10 [Petunia x hybrida] 269 1e-71
ref|NP_201184.1| putative protein; protein id: At5g63790.1, supp... 269 1e-71
>emb|CAC42087.1| putative NAC domain protein [Solanum tuberosum]
Length = 301
Score = 272 bits (696), Expect = 1e-72
Identities = 123/139 (88%), Positives = 130/139 (93%)
Frame = +3
Query: 90 LELPPGFRFHPTDDELVKHYLCAKCASQPINVPIIKELDLYKFDPWQLPDMALYGEKEWY 269
LELP GFRFHPTDDELV+HYLC KCA QPI V II E+DLYKFDPWQLP+ ALYGEKEWY
Sbjct: 11 LELPAGFRFHPTDDELVQHYLCRKCAGQPIAVSIITEIDLYKFDPWQLPEKALYGEKEWY 70
Query: 270 FFTPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKTLGIKKALVFYAGKAPKGVKTNW 449
FF+PRDRKYPNGSRPNRAAGTGYWKATGADKP+GKPKTLGIKKALVFYAGKAP+G+KTNW
Sbjct: 71 FFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGKPKTLGIKKALVFYAGKAPRGIKTNW 130
Query: 450 IMHEYRLANVDRSATKKNN 506
IMHEYRLANVDRSA K NN
Sbjct: 131 IMHEYRLANVDRSAGKNNN 149
>gb|AAN41296.1| unknown protein [Arabidopsis thaliana]
Length = 312
Score = 272 bits (695), Expect = 2e-72
Identities = 126/167 (75%), Positives = 147/167 (87%), Gaps = 2/167 (1%)
Frame = +3
Query: 12 RTKTRVITRRRRRRRRKLKPTRMQGALELPPGFRFHPTDDELVKHYLCAKCASQPINVPI 191
+T+ R+++ R+++ +M+ L LP GFRFHPTD+ELVK YLC +CAS+PINVP+
Sbjct: 26 KTQNRILSTRKQQGTFP----KMKAELNLPAGFRFHPTDEELVKFYLCRRCASEPINVPV 81
Query: 192 IKELDLYKFDPWQLPDMALYGEKEWYFFTPRDRKYPNGSRPNRAAGTGYWKATGADKPIG 371
I E+DLYKF+PW+LP+MALYGEKEWYFF+ RDRKYPNGSRPNRAAGTGYWKATGADKPIG
Sbjct: 82 IAEIDLYKFNPWELPEMALYGEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIG 141
Query: 372 KPKTLGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAT--KKNN 506
KPKTLGIKKALVFYAGKAPKG+KTNWIMHEYRLANVDRSA+ KKNN
Sbjct: 142 KPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRLANVDRSASTNKKNN 188
>gb|AAM34766.1|AF509866_1 nam-like protein 3 [Petunia x hybrida]
Length = 312
Score = 269 bits (688), Expect = 1e-71
Identities = 121/139 (87%), Positives = 130/139 (93%)
Frame = +3
Query: 90 LELPPGFRFHPTDDELVKHYLCAKCASQPINVPIIKELDLYKFDPWQLPDMALYGEKEWY 269
LELP GFRFHPTD+ELV+HYLC KCA QPI V II E+DLYKFDPWQLP+ ALYGEKEWY
Sbjct: 11 LELPAGFRFHPTDEELVQHYLCQKCAGQPICVSIIAEIDLYKFDPWQLPEKALYGEKEWY 70
Query: 270 FFTPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKTLGIKKALVFYAGKAPKGVKTNW 449
FF+PRDRKYPNGSRPNRAAGTGYWKATGADKP+GKP+TLGIKKALVFYAGKAP+G+KTNW
Sbjct: 71 FFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGKPRTLGIKKALVFYAGKAPRGIKTNW 130
Query: 450 IMHEYRLANVDRSATKKNN 506
IMHEYRLANVDRSA K NN
Sbjct: 131 IMHEYRLANVDRSAGKSNN 149
>gb|AAM34773.1|AF509873_1 nam-like protein 10 [Petunia x hybrida]
Length = 304
Score = 269 bits (688), Expect = 1e-71
Identities = 121/140 (86%), Positives = 130/140 (92%)
Frame = +3
Query: 90 LELPPGFRFHPTDDELVKHYLCAKCASQPINVPIIKELDLYKFDPWQLPDMALYGEKEWY 269
L+LPPGFRFHPTD+ELV HYLC KCASQPI VPII E+DLYK+DPW LPD+ALYGEKEWY
Sbjct: 6 LQLPPGFRFHPTDEELVMHYLCRKCASQPIAVPIIAEIDLYKYDPWDLPDLALYGEKEWY 65
Query: 270 FFTPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKTLGIKKALVFYAGKAPKGVKTNW 449
FF+PRDRKYPNGSRPNRAAGTGYWKATGADKPIG PK +GIKKALVFYAGKAPKG KTNW
Sbjct: 66 FFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGHPKAVGIKKALVFYAGKAPKGEKTNW 125
Query: 450 IMHEYRLANVDRSATKKNNN 509
IMHEYRLA+VDRSA K NN+
Sbjct: 126 IMHEYRLADVDRSARKNNNS 145
>ref|NP_201184.1| putative protein; protein id: At5g63790.1, supported by cDNA:
6637., supported by cDNA: gi_15027972 [Arabidopsis
thaliana] gi|10177060|dbj|BAB10472.1| contains
similarity to NAC-domain protein~gene_id:MBK5.27
[Arabidopsis thaliana] gi|21594049|gb|AAM65967.1| ATAF2
protein [Arabidopsis thaliana]
Length = 269
Score = 269 bits (688), Expect = 1e-71
Identities = 123/145 (84%), Positives = 135/145 (92%), Gaps = 2/145 (1%)
Frame = +3
Query: 78 MQGALELPPGFRFHPTDDELVKHYLCAKCASQPINVPIIKELDLYKFDPWQLPDMALYGE 257
M+ L LP GFRFHPTD+ELVK YLC +CAS+PINVP+I E+DLYKF+PW+LP+MALYGE
Sbjct: 1 MKAELNLPAGFRFHPTDEELVKFYLCRRCASEPINVPVIAEIDLYKFNPWELPEMALYGE 60
Query: 258 KEWYFFTPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKTLGIKKALVFYAGKAPKGV 437
KEWYFF+ RDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKTLGIKKALVFYAGKAPKG+
Sbjct: 61 KEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKTLGIKKALVFYAGKAPKGI 120
Query: 438 KTNWIMHEYRLANVDRSAT--KKNN 506
KTNWIMHEYRLANVDRSA+ KKNN
Sbjct: 121 KTNWIMHEYRLANVDRSASTNKKNN 145
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,388,502
Number of Sequences: 1393205
Number of extensions: 13236073
Number of successful extensions: 96654
Number of sequences better than 10.0: 349
Number of HSP's better than 10.0 without gapping: 58478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82838
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
