Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001578A_C01 KMC001578A_c01
(463 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK25977.1|AF360267_1 unknown protein [Arabidopsis thaliana] ... 60 1e-08
dbj|BAB10407.1| emb|CAB63010.1~gene_id:K2A18.9~strong similarity... 59 2e-08
pir||T51154 probable transmembrane protein G5p [imported] - Arab... 36 0.22
ref|NP_190751.1| putative transmembrane protein G5p; protein id:... 36 0.22
ref|XP_234886.1| similar to olfactory receptor MOR142-1 [Mus mus... 35 0.29
>gb|AAK25977.1|AF360267_1 unknown protein [Arabidopsis thaliana] gi|14532908|gb|AAK64136.1|
unknown protein [Arabidopsis thaliana]
Length = 597
Score = 60.1 bits (144), Expect = 1e-08
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = -2
Query: 462 FSLMWASISVGIAAFVRANGRVFCNRPRLHNPR 364
FSL+W I VG+AA VRANGR+FCNRPRLH PR
Sbjct: 564 FSLLWTGICVGMAALVRANGRIFCNRPRLHKPR 596
>dbj|BAB10407.1| emb|CAB63010.1~gene_id:K2A18.9~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 626
Score = 59.3 bits (142), Expect = 2e-08
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = -2
Query: 462 FSLMWASISVGIAAFVRANGRVFCNRPRLHNPR 364
FSL+WA ISV +AA VRANGR+FCNRP LH PR
Sbjct: 593 FSLVWAGISVAVAALVRANGRIFCNRPSLHKPR 625
>pir||T51154 probable transmembrane protein G5p [imported] - Arabidopsis
thaliana gi|1657619|gb|AAB18128.1| G5p [Arabidopsis
thaliana] gi|3068710|gb|AAC14410.1| putative
transmembrane protein G5p [Arabidopsis thaliana]
gi|19347767|gb|AAL86335.1| putative transmembrane
protein G5p [Arabidopsis thaliana]
gi|22136712|gb|AAM91675.1| putative transmembrane
protein G5p [Arabidopsis thaliana]
Length = 588
Score = 35.8 bits (81), Expect = 0.22
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 459 SLMWASISVGIAAFVRANGRVFCNRPRL 376
S +WA ++ G+ A ++ANGR +RPRL
Sbjct: 557 SALWAGVTAGVVAMIKANGRHLTSRPRL 584
>ref|NP_190751.1| putative transmembrane protein G5p; protein id: At3g51830.1
[Arabidopsis thaliana]
Length = 599
Score = 35.8 bits (81), Expect = 0.22
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 459 SLMWASISVGIAAFVRANGRVFCNRPRL 376
S +WA ++ G+ A ++ANGR +RPRL
Sbjct: 568 SALWAGVTAGVVAMIKANGRHLTSRPRL 595
>ref|XP_234886.1| similar to olfactory receptor MOR142-1 [Mus musculus] [Rattus
norvegicus]
Length = 287
Score = 35.4 bits (80), Expect = 0.29
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = -3
Query: 287 GFSSTTTPKSLQRIISSPNASS--GCLIYLFFLY*FVNTAALRNIFI*LQSCSAFAASSV 114
GF+STT PK+LQ I + S GC+ +FF F+ L N+ + + + F A
Sbjct: 39 GFTSTTIPKALQNIHTQSKLISFTGCITQIFF---FIVFGCLDNLLLTVMAYDRFMAICH 95
Query: 113 FLAPLVYLNFFLCLV 69
L +V +N C++
Sbjct: 96 PLHYVVIMNSCFCVM 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 362,351,592
Number of Sequences: 1393205
Number of extensions: 7362234
Number of successful extensions: 17539
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 16999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17523
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
