Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001572A_C01 KMC001572A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO22709.1| unknown protein [Arabidopsis thaliana] 87 2e-25
ref|NP_194476.1| hypothetical protein; protein id: At4g27460.1 [... 86 7e-20
ref|NP_200186.1| putative protein; protein id: At5g53750.1 [Arab... 79 1e-17
gb|AAM93687.1| unknown protein [Oryza sativa (japonica cultivar-... 73 3e-12
ref|NP_013018.1| Suppressor of mutant AC40 subunit of RNA polyme... 37 0.13
>gb|AAO22709.1| unknown protein [Arabidopsis thaliana]
Length = 391
Score = 86.7 bits (213), Expect(2) = 2e-25
Identities = 52/96 (54%), Positives = 65/96 (67%)
Frame = -3
Query: 571 DLMAYIDCGSPPEDLVTVVKARLKEKNLEKMLQEFTISSSSAGAFSSSSSDEESASTRAL 392
DLMAYID +PPE LV +V+ RL++K L ++ F S S+ + SS S EE A R
Sbjct: 262 DLMAYIDGANPPESLVQIVRNRLEDKGLVGLMSLF--DSLSSYSTSSGYSSEEEAPVR-- 317
Query: 391 TRRLSRSSSSSVRMVRKAEAIVCHPQSSLVAVMIQA 284
T RS SSS RM RK+EAIVC+P+SSL+AVMIQA
Sbjct: 318 TTSYGRSMSSSARMARKSEAIVCNPKSSLMAVMIQA 353
Score = 50.4 bits (119), Expect(2) = 2e-25
Identities = 22/35 (62%), Positives = 28/35 (79%)
Frame = -1
Query: 282 IAHRVNYLWVIEDDCSLVGIVTFSNILKVFREHVE 178
+AHRVNY WV+E D VG+VTF +ILKVFR+ +E
Sbjct: 354 VAHRVNYAWVVEKDGCFVGMVTFVDILKVFRKFLE 388
>ref|NP_194476.1| hypothetical protein; protein id: At4g27460.1 [Arabidopsis
thaliana] gi|7486257|pir||T08938 hypothetical protein
F27G19.60 - Arabidopsis thaliana
gi|4972071|emb|CAB43878.1| hypothetical protein
[Arabidopsis thaliana] gi|7269600|emb|CAB81396.1|
hypothetical protein [Arabidopsis thaliana]
Length = 433
Score = 86.3 bits (212), Expect(2) = 7e-20
Identities = 52/96 (54%), Positives = 65/96 (67%)
Frame = -3
Query: 571 DLMAYIDCGSPPEDLVTVVKARLKEKNLEKMLQEFTISSSSAGAFSSSSSDEESASTRAL 392
DLMAYID +PPE LV +V+ RL++K L ++ F S S+ + SS S EE A R
Sbjct: 262 DLMAYIDGANPPESLVQIVRNRLEDKGLIGLMSLF--DSLSSYSTSSGYSSEEEAPVR-- 317
Query: 391 TRRLSRSSSSSVRMVRKAEAIVCHPQSSLVAVMIQA 284
T RS SSS RM RK+EAIVC+P+SSL+AVMIQA
Sbjct: 318 TTSYGRSMSSSARMARKSEAIVCNPKSSLMAVMIQA 353
Score = 32.3 bits (72), Expect(2) = 7e-20
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 282 IAHRVNYLWVIEDDCSLVGIV 220
+AHRVNY WV+E D VG++
Sbjct: 354 VAHRVNYAWVVEKDGCFVGML 374
>ref|NP_200186.1| putative protein; protein id: At5g53750.1 [Arabidopsis thaliana]
gi|9759069|dbj|BAB09547.1|
gene_id:MGN6.11~pir||T08938~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 427
Score = 78.6 bits (192), Expect(2) = 1e-17
Identities = 49/97 (50%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Frame = -3
Query: 571 DLMAYIDCGSPPEDLVTVVKARLKEKNLEKMLQEFTISSSSAGAFSSSSSDEES-ASTRA 395
DLM+YID PPE LV VV+ RL++K + ++ S S+G SSSDEES A
Sbjct: 278 DLMSYIDGSGPPESLVGVVRNRLEDKGMVGLISLIDSLSLSSG----SSSDEESPAGKTR 333
Query: 394 LTRRLSRSSSSSVRMVRKAEAIVCHPQSSLVAVMIQA 284
+T RS SS+ RM RK+ AIVC+ +SSL+AVMIQA
Sbjct: 334 MTSSYGRSVSSAARMARKSVAIVCNRKSSLMAVMIQA 370
Score = 32.3 bits (72), Expect(2) = 1e-17
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -1
Query: 282 IAHRVNYLWVIEDDCSLVG 226
IAHRV+Y+WVI++D L+G
Sbjct: 371 IAHRVSYVWVIDEDGCLIG 389
>gb|AAM93687.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 385
Score = 72.8 bits (177), Expect = 3e-12
Identities = 50/108 (46%), Positives = 64/108 (58%), Gaps = 4/108 (3%)
Frame = -3
Query: 571 DLMAYIDC-GSPPEDLVTVVKARLKEKNLEKMLQEFTISSSSAGAFSSSS---SDEESAS 404
DLMAY+D G+PPE ++ VKA LK K L+ ML+ + S+ AFSSSS S ++ A
Sbjct: 251 DLMAYVDYFGAPPEHILRAVKAGLKSKGLDAMLELVENEAVSSFAFSSSSTSSSSDDEAH 310
Query: 403 TRALTRRLSRSSSSSVRMVRKAEAIVCHPQSSLVAVMIQAHCSQSELL 260
RA RL R SS S E +VC P SSLVAVM+QA ++ L
Sbjct: 311 GRAA--RLRRPSSGSYGRRSTEEPVVCSPASSLVAVMMQALAHRASYL 356
Score = 54.7 bits (130), Expect = 8e-07
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Frame = -1
Query: 387 GGSRGLQAPQSGW*GRR---KP*CVIPRALWLL**FKPIAHRVNYLWVIE--DDCSLVGI 223
G + L+ P SG GRR +P P + + + +AHR +YLWV++ DDC L GI
Sbjct: 311 GRAARLRRPSSGSYGRRSTEEPVVCSPASSLVAVMMQALAHRASYLWVLDEDDDCRLAGI 370
Query: 222 VTFSNILKVFREHVE 178
VTF+++L VFRE ++
Sbjct: 371 VTFADVLTVFREQLQ 385
>ref|NP_013018.1| Suppressor of mutant AC40 subunit of RNA polymerase I and III (high
serine); Srp40p [Saccharomyces cerevisiae]
gi|548976|sp|P32583|SR40_YEAST SUPPRESSOR PROTEIN SRP40
gi|539364|pir||S38170 SRP40 protein - yeast
(Saccharomyces cerevisiae) gi|450552|emb|CAA51946.1| ORF
YKR412 [Saccharomyces cerevisiae]
gi|486581|emb|CAA82171.1| ORF YKR092c [Saccharomyces
cerevisiae]
Length = 406
Score = 37.4 bits (85), Expect = 0.13
Identities = 23/54 (42%), Positives = 32/54 (58%)
Frame = -3
Query: 520 VVKARLKEKNLEKMLQEFTISSSSAGAFSSSSSDEESASTRALTRRLSRSSSSS 359
V K +KEK +E+ + SSSS+ + SSSSS S+S + + S SSSSS
Sbjct: 11 VPKLSVKEKEIEEKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSS 64
Score = 31.6 bits (70), Expect = 7.4
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = -3
Query: 472 EFTISSSSAGAFSSSSSDEESASTRALTRRLSRSSSSS 359
E + SSSS+ + SSSSSD ES+S + S SSSSS
Sbjct: 74 ESSSSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSSS 111
Score = 31.2 bits (69), Expect = 9.7
Identities = 19/55 (34%), Positives = 32/55 (57%)
Frame = -3
Query: 526 VTVVKARLKEKNLEKMLQEFTISSSSAGAFSSSSSDEESASTRALTRRLSRSSSS 362
++V + ++EK+ + SSSS+ + SSSSS ES+S+ + + S S SS
Sbjct: 14 LSVKEKEIEEKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSS 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,828,075
Number of Sequences: 1393205
Number of extensions: 10797918
Number of successful extensions: 53141
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 36676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45870
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
