Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001568A_C01 KMC001568A_c01
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171821.1| unknown protein; protein id: At1g03220.1, suppo... 169 4e-41
gb|AAM61574.1| EDGP precursor [Arabidopsis thaliana] 168 6e-41
ref|NP_563679.1| expressed protein; protein id: At1g03230.1, sup... 161 8e-39
pir||T14329 dermal glycoprotein precursor, extracellular - carro... 149 4e-35
gb|AAN87262.1| xyloglucan-specific fungal endoglucanase inhibito... 143 2e-33
>ref|NP_171821.1| unknown protein; protein id: At1g03220.1, supported by cDNA:
12454., supported by cDNA: gi_13272442, supported by
cDNA: gi_14334705, supported by cDNA: gi_16323419
[Arabidopsis thaliana] gi|25296172|pir||F86163
hypothetical protein F15K9.17 - Arabidopsis thaliana
gi|3850579|gb|AAC72119.1| Strong similarity to gb|D14550
extracellular dermal glycoprotein (EDGP) precursor from
Daucus carota. ESTs gb|H37281, gb|T44167, gb|T21813,
gb|N38437, gb|Z26470, gb|R65072, gb|N76373, gb|F15470,
gb|Z35182, gb|H76373, gb|Z34678 and gb|Z35387 come from
this gene. [Arabidopsis thaliana]
gi|13272443|gb|AAK17160.1|AF325092_1 unknown protein
[Arabidopsis thaliana] gi|14334706|gb|AAK59531.1|
unknown protein [Arabidopsis thaliana]
gi|16323420|gb|AAL15204.1| unknown protein [Arabidopsis
thaliana]
Length = 433
Score = 169 bits (427), Expect = 4e-41
Identities = 85/127 (66%), Positives = 103/127 (80%), Gaps = 1/127 (0%)
Frame = -1
Query: 635 FIDAAAARNIKRVAAVKPFEVCFSGKGVGSTRLGAAVPTVEFVMQN-GVTWYVFGANSVV 459
F+ AAAR+IKRVA+VKPF CFS K VG TRLG AVP +E V+ + V W +FGANS+V
Sbjct: 309 FVKQAAARSIKRVASVKPFGACFSTKNVGVTRLGYAVPEIELVLHSKDVVWRIFGANSMV 368
Query: 458 DVHNDGSVLCLGFVNGGKNARTSIVIGGYQLENNLVQFDLASSRLGFSSLLYGRQTTCAN 279
V +D V+CLGFV+GG NARTS+VIGG+QLE+NL++FDLAS++ GFSS L GRQT CAN
Sbjct: 369 SVSDD--VICLGFVDGGVNARTSVVIGGFQLEDNLIEFDLASNKFGFSSTLLGRQTNCAN 426
Query: 278 FNFTSTA 258
FNFTSTA
Sbjct: 427 FNFTSTA 433
>gb|AAM61574.1| EDGP precursor [Arabidopsis thaliana]
Length = 433
Score = 168 bits (425), Expect = 6e-41
Identities = 85/127 (66%), Positives = 102/127 (79%), Gaps = 1/127 (0%)
Frame = -1
Query: 635 FIDAAAARNIKRVAAVKPFEVCFSGKGVGSTRLGAAVPTVEFVMQN-GVTWYVFGANSVV 459
F+ A AR+IKRVA+VKPF CFS K VG TRLG AVP +E V+ + V W +FGANS+V
Sbjct: 309 FVKQALARSIKRVASVKPFGACFSTKNVGVTRLGYAVPEIELVLHSKDVVWRIFGANSMV 368
Query: 458 DVHNDGSVLCLGFVNGGKNARTSIVIGGYQLENNLVQFDLASSRLGFSSLLYGRQTTCAN 279
V +D V+CLGFV+GG NARTS+VIGG+QLE+NL++FDLAS+R GFSS L GRQT CAN
Sbjct: 369 SVSDD--VICLGFVDGGVNARTSVVIGGFQLEDNLIEFDLASNRFGFSSTLLGRQTNCAN 426
Query: 278 FNFTSTA 258
FNFTSTA
Sbjct: 427 FNFTSTA 433
>ref|NP_563679.1| expressed protein; protein id: At1g03230.1, supported by cDNA:
gi_12083229 [Arabidopsis thaliana]
gi|25296173|pir||G86163 hypothetical protein F15K9.16 -
Arabidopsis thaliana gi|3850580|gb|AAC72120.1| Strong
similarity to gb|D14550 extracellular dermal
glycoprotein (EDGP) precursor from Daucus carota. ESTs
gb|84105 and gb|AI100071 come from this gene.
[Arabidopsis thaliana]
gi|12083230|gb|AAG48774.1|AF332411_1 unknown protein
[Arabidopsis thaliana]
Length = 434
Score = 161 bits (407), Expect = 8e-39
Identities = 82/127 (64%), Positives = 100/127 (78%), Gaps = 1/127 (0%)
Frame = -1
Query: 635 FIDAAAARNIKRVAAVKPFEVCFSGKGVGSTRLGAAVPTVEFVMQN-GVTWYVFGANSVV 459
FI AAAR+IKRVA+VKPF CFS K VG TRLG AVP ++ V+ + V W +FGANS+V
Sbjct: 310 FIRQAAARSIKRVASVKPFGACFSTKNVGVTRLGYAVPEIQLVLHSKDVVWRIFGANSMV 369
Query: 458 DVHNDGSVLCLGFVNGGKNARTSIVIGGYQLENNLVQFDLASSRLGFSSLLYGRQTTCAN 279
V +D V+CLGFV+GG N S+VIGG+QLE+NL++FDLAS++ GFSS L GRQT CAN
Sbjct: 370 SVSDD--VICLGFVDGGVNPGASVVIGGFQLEDNLIEFDLASNKFGFSSTLLGRQTNCAN 427
Query: 278 FNFTSTA 258
FNFTSTA
Sbjct: 428 FNFTSTA 434
>pir||T14329 dermal glycoprotein precursor, extracellular - carrot (fragment)
gi|285741|dbj|BAA03413.1| EDGP precursor [Daucus carota]
Length = 433
Score = 149 bits (375), Expect = 4e-35
Identities = 76/126 (60%), Positives = 99/126 (78%), Gaps = 1/126 (0%)
Frame = -1
Query: 638 AFIDAAAARNIKRVAAVKPFEVCFSGKGVGSTRLGAAVPTVEFVMQN-GVTWYVFGANSV 462
AFI +AARNI RVA+V PF CFS + STRLG +VP+++ V+Q+ V W + G+NS+
Sbjct: 310 AFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSM 369
Query: 461 VDVHNDGSVLCLGFVNGGKNARTSIVIGGYQLENNLVQFDLASSRLGFSSLLYGRQTTCA 282
V ++++ V+CLG V+GG N RTSIVIGG+QLE+NLVQFDLA+SR+GFS L G +TTCA
Sbjct: 370 VYINDN--VVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCA 427
Query: 281 NFNFTS 264
NFNFTS
Sbjct: 428 NFNFTS 433
>gb|AAN87262.1| xyloglucan-specific fungal endoglucanase inhibitor protein
precursor [Lycopersicon esculentum]
Length = 438
Score = 143 bits (361), Expect = 2e-33
Identities = 71/117 (60%), Positives = 91/117 (77%), Gaps = 1/117 (0%)
Frame = -1
Query: 611 NIKRVAAVKPFEVCFSGKGVGSTRLGAAVPTVEFVMQNG-VTWYVFGANSVVDVHNDGSV 435
N+ RVA V PF VCF + +GSTR+G AVP+++ V+QN V W +FGANS+V V + V
Sbjct: 322 NVTRVAVVAPFRVCFDSRDIGSTRVGPAVPSIDLVLQNANVVWTIFGANSMVQVSEN--V 379
Query: 434 LCLGFVNGGKNARTSIVIGGYQLENNLVQFDLASSRLGFSSLLYGRQTTCANFNFTS 264
LCLG ++GG NARTSIVIGG+ +E+NL+QFD A+SRLGF+S + RQTTC NFNFTS
Sbjct: 380 LCLGVLDGGVNARTSIVIGGHTIEDNLLQFDHAASRLGFTSSILFRQTTCDNFNFTS 436
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 593,798,563
Number of Sequences: 1393205
Number of extensions: 14751409
Number of successful extensions: 71269
Number of sequences better than 10.0: 350
Number of HSP's better than 10.0 without gapping: 59257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68575
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
