Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001558A_C03 KMC001558A_c03
(641 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S52023 translation initiation factor eIF-4A.14 - common tob... 193 2e-49
sp|Q40467|IF4Y_TOBAC Eukaryotic initiation factor 4A-14 (eIF-4A-... 193 2e-49
gb|AAL91176.1| eukaryotic translation initiation factor [Arabido... 192 2e-49
ref|NP_566469.1| eukaryotic translation initiation factor 4A-1 (... 192 2e-49
gb|AAM63951.1| Eukaryotic initiation factor 4A, putative [Arabid... 192 2e-49
>pir||S52023 translation initiation factor eIF-4A.14 - common tobacco
Length = 413
Score = 193 bits (491), Expect(2) = 2e-49
Identities = 96/97 (98%), Positives = 97/97 (99%)
Frame = -1
Query: 641 MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 462
MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT
Sbjct: 299 MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 358
Query: 461 QPENYLHRIGRSGRFGRKGVAINFVTQDDERMLFDIQ 351
QPENYLHRIGRSGRFGRKGVAINFVT+DDERMLFDIQ
Sbjct: 359 QPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQ 395
Score = 24.6 bits (52), Expect(2) = 2e-49
Identities = 9/13 (69%), Positives = 13/13 (99%)
Frame = -2
Query: 331 VVEELPSNIAELL 293
V+EELP+N+A+LL
Sbjct: 401 VIEELPANVADLL 413
>sp|Q40467|IF4Y_TOBAC Eukaryotic initiation factor 4A-14 (eIF-4A-14) (eIF4A-14)
gi|485943|emb|CAA55742.1| NeIF-4A14 [Nicotiana tabacum]
Length = 413
Score = 193 bits (491), Expect(2) = 2e-49
Identities = 96/97 (98%), Positives = 97/97 (99%)
Frame = -1
Query: 641 MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 462
MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT
Sbjct: 299 MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 358
Query: 461 QPENYLHRIGRSGRFGRKGVAINFVTQDDERMLFDIQ 351
QPENYLHRIGRSGRFGRKGVAINFVT+DDERMLFDIQ
Sbjct: 359 QPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQ 395
Score = 24.6 bits (52), Expect(2) = 2e-49
Identities = 9/13 (69%), Positives = 13/13 (99%)
Frame = -2
Query: 331 VVEELPSNIAELL 293
V+EELP+N+A+LL
Sbjct: 401 VIEELPANVADLL 413
>gb|AAL91176.1| eukaryotic translation initiation factor [Arabidopsis thaliana]
Length = 412
Score = 192 bits (487), Expect(2) = 2e-49
Identities = 95/97 (97%), Positives = 97/97 (99%)
Frame = -1
Query: 641 MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 462
MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPT
Sbjct: 298 MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPT 357
Query: 461 QPENYLHRIGRSGRFGRKGVAINFVTQDDERMLFDIQ 351
QPENYLHRIGRSGRFGRKGVAINFVT+DDERMLFDIQ
Sbjct: 358 QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394
Score = 26.2 bits (56), Expect(2) = 2e-49
Identities = 11/13 (84%), Positives = 13/13 (99%)
Frame = -2
Query: 331 VVEELPSNIAELL 293
VVEELPSN+A+LL
Sbjct: 400 VVEELPSNVADLL 412
>ref|NP_566469.1| eukaryotic translation initiation factor 4A-1 (eIF4A-1); protein
id: At3g13920.1, supported by cDNA: 29310., supported by
cDNA: gi_15293046, supported by cDNA: gi_15450485,
supported by cDNA: gi_19698880, supported by cDNA:
gi_20259054, supported by cDNA: gi_20466100 [Arabidopsis
thaliana] gi|1170503|sp|P41376|IF41_ARATH Eukaryotic
initiation factor 4A-1 (eIF-4A-1) (eIF4A-1)
gi|322503|pir||JC1452 translation initiation factor
eIF-4A1 - Arabidopsis thaliana gi|16554|emb|CAA46188.1|
eukaryotic translation initiation factor 4A-1
[Arabidopsis thaliana] gi|11994363|dbj|BAB02322.1|
eukaryotic translation initiation factor; RNA helicase
[Arabidopsis thaliana] gi|14594805|emb|CAC43288.1|
translation initiation factor eIF-4A1 [Arabidopsis
thaliana] gi|15293047|gb|AAK93634.1| putative Eukaryotic
initiation factor 4A [Arabidopsis thaliana]
gi|15450486|gb|AAK96536.1| AT3g13920/MDC16_4
[Arabidopsis thaliana] gi|20259055|gb|AAM14243.1|
putative eukaryotic initiation factor 4A [Arabidopsis
thaliana] gi|20466101|gb|AAM19972.1| AT3g13920/MDC16_4
[Arabidopsis thaliana] gi|22655066|gb|AAM98124.1|
unknown protein [Arabidopsis thaliana]
gi|23397033|gb|AAN31802.1| putative eukaryotic
initiation factor 4A [Arabidopsis thaliana]
Length = 412
Score = 192 bits (487), Expect(2) = 2e-49
Identities = 95/97 (97%), Positives = 97/97 (99%)
Frame = -1
Query: 641 MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 462
MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPT
Sbjct: 298 MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPT 357
Query: 461 QPENYLHRIGRSGRFGRKGVAINFVTQDDERMLFDIQ 351
QPENYLHRIGRSGRFGRKGVAINFVT+DDERMLFDIQ
Sbjct: 358 QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394
Score = 26.2 bits (56), Expect(2) = 2e-49
Identities = 11/13 (84%), Positives = 13/13 (99%)
Frame = -2
Query: 331 VVEELPSNIAELL 293
VVEELPSN+A+LL
Sbjct: 400 VVEELPSNVADLL 412
>gb|AAM63951.1| Eukaryotic initiation factor 4A, putative [Arabidopsis thaliana]
Length = 412
Score = 192 bits (487), Expect(2) = 2e-49
Identities = 95/97 (97%), Positives = 97/97 (99%)
Frame = -1
Query: 641 MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 462
MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPT
Sbjct: 298 MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPT 357
Query: 461 QPENYLHRIGRSGRFGRKGVAINFVTQDDERMLFDIQ 351
QPENYLHRIGRSGRFGRKGVAINFVT+DDERMLFDIQ
Sbjct: 358 QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394
Score = 26.2 bits (56), Expect(2) = 2e-49
Identities = 11/13 (84%), Positives = 13/13 (99%)
Frame = -2
Query: 331 VVEELPSNIAELL 293
VVEELPSN+A+LL
Sbjct: 400 VVEELPSNVADLL 412
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,791,603
Number of Sequences: 1393205
Number of extensions: 11408137
Number of successful extensions: 34979
Number of sequences better than 10.0: 2256
Number of HSP's better than 10.0 without gapping: 31794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34415
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
