Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001546A_C01 KMC001546A_c01
(747 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P02256|H1_PARAN HISTONE H1, GONADAL gi|70672|pir||HSUR1P hist... 43 0.004
pir||S28832 microtubule-associated protein H1 (clone KS3.1) - lo... 39 0.079
sp|Q9DG99|CGB2_ORYJA G2/mitotic-specific cyclin B2 gi|11034752|d... 39 0.079
pir||T29757 protein UNC-89 - Caenorhabditis elegans 39 0.079
gb|AAB00542.1| UNC-89 39 0.079
>sp|P02256|H1_PARAN HISTONE H1, GONADAL gi|70672|pir||HSUR1P histone H1, gonadal - sea
urchin (Parechinus angulosus)
Length = 248
Score = 43.1 bits (100), Expect = 0.004
Identities = 26/64 (40%), Positives = 36/64 (55%), Gaps = 1/64 (1%)
Frame = -1
Query: 747 EAAAAEEKPKANGKPAKSPKKEATSSSKNVA-SSAKKAKGEARQEPPPPESDMPVVIVKE 571
+AAAA+ K A K AK PKK+A +K A S KKAK A++ P ++ K+
Sbjct: 159 KAAAAKRKAAAKAKKAKKPKKKAAKKAKKPAKKSPKKAKKPAKKSPKKKKAKRSPKKAKK 218
Query: 570 SAGK 559
+AGK
Sbjct: 219 AAGK 222
>pir||S28832 microtubule-associated protein H1 (clone KS3.1) - longfin squid
(fragment) gi|444864|prf||1908250B
microtubule-associated protein H1:ISOTYPE=KS3.1
Length = 292
Score = 38.9 bits (89), Expect = 0.079
Identities = 47/217 (21%), Positives = 89/217 (40%), Gaps = 28/217 (12%)
Frame = +1
Query: 19 NHFSLTSIQFKPY*HISNRKIKLSNRNP*LLAKS*GLKQPKKYSTKDAQTPYIN*----- 183
N+ SL + KP H++N + + P + L P K +N
Sbjct: 77 NNSSLNNPMKKPVNHLNNSSLNKPMKKPANHLNNSSLNNPMKKPVNHLNNSSLNKPMKKP 136
Query: 184 -DHVNNQNILHTGQKL------NSSI*RLSDSHK*ITEHIKSYTTHNP---KFLDDLNAS 333
+H+NN ++ + +KL NSS+ ++ K H+K+ ++ N K ++ LN +
Sbjct: 137 VNHLNNSSLNNPMKKLVNHFNSNSSL----NNMKKPVNHLKNNSSLNKPMKKLVNYLNNN 192
Query: 334 KINLVCSSISGARLANSSSSGNLYLLPPSIQLGPLGCSN*LQSLLHHI------------ 477
+L +I NS+S N ++ P L +N ++ + H+
Sbjct: 193 SSSLNNHTIKLVNRLNSNSLLNTHMKKPVNHLNNSSLNNHMKKPVRHLNSNSSLNKPMKK 252
Query: 478 -LIQPSHTVTKHFTQKHTGISLHISVHHLSSRFLHNH 585
+ P+++ H T I + V+HL + L+NH
Sbjct: 253 PVNYPNNSSLNHLTNSSLIIPMKKPVNHLMNSSLNNH 289
>sp|Q9DG99|CGB2_ORYJA G2/mitotic-specific cyclin B2 gi|11034752|dbj|BAB17222.1|
cyclin-dependent kinase regulatory subunit cyclin B2
[Oryzias javanicus]
Length = 382
Score = 38.9 bits (89), Expect = 0.079
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Frame = -1
Query: 735 AEEKPKANGKPAKSPKKEATS--SSKNVASSAKKAKGEARQEPPPPESDMPVVIVKESAG 562
A E P GK A P++ A +++N A++A + G ++++P P + P +V SAG
Sbjct: 14 AAENPVRMGKGAADPRRAALGEITNRNAAAAANRKMGPSKKQPKPSCAQKPQPVVHTSAG 73
Query: 561 KV------VDTDVKADTSVLLSEMFRYGVTGLNE 478
+ V+ D S SE+ V ++E
Sbjct: 74 DPAPISADMSMKVEQDLSQAFSEVLMLAVQDVDE 107
>pir||T29757 protein UNC-89 - Caenorhabditis elegans
Length = 6642
Score = 38.9 bits (89), Expect = 0.079
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = -1
Query: 735 AEEKPKANGKPAKSPKKEATSSSKNVASSAKKAKGEARQEPPPPESDMPVVIVKESAGKV 556
AEEKPK+ K KSP+K A K+ K + A ++P P + S K+
Sbjct: 1730 AEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKK------ESSPVKM 1783
Query: 555 VDTDVKADT 529
D +VK+ T
Sbjct: 1784 ADDEVKSPT 1792
Score = 34.7 bits (78), Expect = 1.5
Identities = 24/69 (34%), Positives = 34/69 (48%)
Frame = -1
Query: 735 AEEKPKANGKPAKSPKKEATSSSKNVASSAKKAKGEARQEPPPPESDMPVVIVKESAGKV 556
A++KPK+ K KSP+K AT ++V S KK K + E P + S K
Sbjct: 1627 ADDKPKSPTKKEKSPEKSAT---EDVKSPTKKEKSPEKVEEKPTSPTKK----ESSPTKK 1679
Query: 555 VDTDVKADT 529
D +VK+ T
Sbjct: 1680 TDDEVKSPT 1688
>gb|AAB00542.1| UNC-89
Length = 6632
Score = 38.9 bits (89), Expect = 0.079
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = -1
Query: 735 AEEKPKANGKPAKSPKKEATSSSKNVASSAKKAKGEARQEPPPPESDMPVVIVKESAGKV 556
AEEKPK+ K KSP+K A K+ K + A ++P P + S K+
Sbjct: 1730 AEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKK------ESSPVKM 1783
Query: 555 VDTDVKADT 529
D +VK+ T
Sbjct: 1784 ADDEVKSPT 1792
Score = 34.7 bits (78), Expect = 1.5
Identities = 24/69 (34%), Positives = 34/69 (48%)
Frame = -1
Query: 735 AEEKPKANGKPAKSPKKEATSSSKNVASSAKKAKGEARQEPPPPESDMPVVIVKESAGKV 556
A++KPK+ K KSP+K AT ++V S KK K + E P + S K
Sbjct: 1627 ADDKPKSPTKKEKSPEKSAT---EDVKSPTKKEKSPEKVEEKPTSPTKK----ESSPTKK 1679
Query: 555 VDTDVKADT 529
D +VK+ T
Sbjct: 1680 TDDEVKSPT 1688
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 671,028,398
Number of Sequences: 1393205
Number of extensions: 15791539
Number of successful extensions: 71742
Number of sequences better than 10.0: 218
Number of HSP's better than 10.0 without gapping: 61003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70583
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
