Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001542A_C01 KMC001542A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK55935.1|AF268053_2 RNA polymerase beta-prime subunit [Cand... 33 3.8
ref|NP_038944.1| Hoxa1 regulated gene [Mus musculus] gi|6449326|... 32 6.5
ref|XP_194626.1| similar to Hoxa1 regulated gene [Mus musculus] 32 6.5
>gb|AAK55935.1|AF268053_2 RNA polymerase beta-prime subunit [Candidatus Carsonella ruddii]
Length = 842
Score = 32.7 bits (73), Expect = 3.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 98 VCFNSKTCKCPKAGHYRN*KISTTLSSLSNIAMCRQLKH 214
+C KTCKC K + N K S L++IA+C + H
Sbjct: 56 ICCEKKTCKCNKNNKFINLKRSHNEYRLAHIALCYPILH 94
>ref|NP_038944.1| Hoxa1 regulated gene [Mus musculus]
gi|6449326|gb|AAF08933.1|AF197105_1 retinoic
acid-responsive protein HA1R-62 [Mus musculus]
Length = 251
Score = 32.0 bits (71), Expect = 6.5
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = -1
Query: 319 FLYHDTGNYQVSLISEVFINVIGDKMKAEVKILLIVFELSAHSYIAEGR*CCRNFLISIM 140
F Y +Y + L++ V V+G ++ +K + F S I EG C IS
Sbjct: 79 FFYFGVHSYSILLVAAVKDEVVGVGVRCAMKNRNLGFLTSVQMPILEGTFSCERLYIS-- 136
Query: 139 SCFWTFARF 113
FW FA F
Sbjct: 137 --FWIFALF 143
>ref|XP_194626.1| similar to Hoxa1 regulated gene [Mus musculus]
Length = 92
Score = 32.0 bits (71), Expect = 6.5
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = -1
Query: 319 FLYHDTGNYQVSLISEVFINVIGDKMKAEVKILLIVFELSAHSYIAEGR*CCRNFLISIM 140
F Y +Y + L++ V V+G ++ +K + F S I EG C IS
Sbjct: 11 FFYFGVHSYSILLVAAVKDEVVGVGVRCAMKNRNLGFLTSVQMPILEGTFSCERLYIS-- 68
Query: 139 SCFWTFARF 113
FW FA F
Sbjct: 69 --FWIFALF 75
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,067,041
Number of Sequences: 1393205
Number of extensions: 9069641
Number of successful extensions: 16253
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16253
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
