Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001536A_C01 KMC001536A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175273.1| hypothetical protein; protein id: At1g48400.1 [... 57 2e-07
gb|EAA10380.1| agCP2167 [Anopheles gambiae str. PEST] 55 4e-07
ref|NP_473182.1| hypothetical protein, conserved [Plasmodium fal... 55 6e-07
gb|AAA48674.1| calsequestrin 52 3e-06
sp|P19204|CAQ1_CHICK Calsequestrin, skeletal muscle isoform prec... 52 3e-06
>ref|NP_175273.1| hypothetical protein; protein id: At1g48400.1 [Arabidopsis
thaliana] gi|25352369|pir||B96524 hypothetical protein
F11A17.5 [imported] - Arabidopsis thaliana
gi|5733869|gb|AAD49757.1|AC007932_5 Contains F-box
domain PF|00646. [Arabidopsis thaliana]
Length = 513
Score = 56.6 bits (135), Expect = 2e-07
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = -1
Query: 430 SSRFWDSLSDGSSSDDDDDDDDSEDEDDDDNEDDDDE 320
S R W S +D SDDDDDDDD +D+DDDD++DDDD+
Sbjct: 271 SLRLWVSTNDYDYSDDDDDDDDDDDDDDDDDDDDDDD 307
Score = 51.6 bits (122), Expect = 5e-06
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = -1
Query: 430 SSRFWDSLSDGSSSDDDDDDDDSEDEDDDDNEDDDDE 320
S+ +D D DDDDDDDD +D+DDDD++DDDD+
Sbjct: 277 STNDYDYSDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 313
Score = 51.2 bits (121), Expect = 7e-06
Identities = 26/62 (41%), Positives = 34/62 (53%)
Frame = -1
Query: 505 EDRGLLRFWDFNDATKPFTKIEDCPSSRFWDSLSDGSSSDDDDDDDDSEDEDDDDNEDDD 326
E R LR W +T + +D D D DDDDDDDD +D+DDDD++DDD
Sbjct: 267 EARLSLRLWV---STNDYDYSDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 323
Query: 325 DE 320
D+
Sbjct: 324 DD 325
Score = 48.1 bits (113), Expect = 6e-05
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = -1
Query: 415 DSLSDGSSSDDDDDDDDSEDEDDDDNEDDDDEW 317
D D DDDDDDDD +D+DDDD++DDD ++
Sbjct: 296 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDGDY 328
>gb|EAA10380.1| agCP2167 [Anopheles gambiae str. PEST]
Length = 550
Score = 55.5 bits (132), Expect = 4e-07
Identities = 23/36 (63%), Positives = 30/36 (82%)
Frame = -1
Query: 430 SSRFWDSLSDGSSSDDDDDDDDSEDEDDDDNEDDDD 323
S+ + S S+G SSDDDDDDDD +D+DDDD++DDDD
Sbjct: 510 SNEWLGSDSEGDSSDDDDDDDDDDDDDDDDDDDDDD 545
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = -1
Query: 451 TKIEDCPSSRFW---DSLSDGSSSDDDDDDDDSEDEDDDDNEDDDDE 320
T I + +S W DS D S DDDDDDDD +D+DDDD++DD ++
Sbjct: 502 TLIANSFNSNEWLGSDSEGDSSDDDDDDDDDDDDDDDDDDDDDDSED 548
Score = 48.1 bits (113), Expect = 6e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = -1
Query: 415 DSLSDGSSSDDDDDDDDSEDEDDDDNEDD 329
DS D DDDDDDDD +D+DDDD+EDD
Sbjct: 521 DSSDDDDDDDDDDDDDDDDDDDDDDSEDD 549
Score = 45.4 bits (106), Expect = 4e-04
Identities = 17/27 (62%), Positives = 21/27 (76%)
Frame = -1
Query: 406 SDGSSSDDDDDDDDSEDEDDDDNEDDD 326
SD DDDDDDDD +D+DDDD+ +DD
Sbjct: 523 SDDDDDDDDDDDDDDDDDDDDDDSEDD 549
>ref|NP_473182.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
gi|4493896|emb|CAB39005.1| hypothetical protein,
conserved [Plasmodium falciparum 3D7]
Length = 3933
Score = 54.7 bits (130), Expect = 6e-07
Identities = 28/75 (37%), Positives = 39/75 (51%), Gaps = 10/75 (13%)
Frame = -1
Query: 514 CYCEDRGLLRFW----------DFNDATKPFTKIEDCPSSRFWDSLSDGSSSDDDDDDDD 365
C CE++ FW +FN + KI++ D + DDDDDDDD
Sbjct: 1178 CTCENKNKFYFWCFLFLHIIRINFNKSLLKNYKIKEA---------GDDTDDDDDDDDDD 1228
Query: 364 SEDEDDDDNEDDDDE 320
++E+DDD+EDDDDE
Sbjct: 1229 DDEEEDDDDEDDDDE 1243
>gb|AAA48674.1| calsequestrin
Length = 387
Score = 52.4 bits (124), Expect = 3e-06
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = -1
Query: 445 IEDCPSSRFWDSLSDGSSSDDDDDDDDSEDEDDDDNEDDDDE 320
IED S + D DDDDDDDD +D+DDDD++DDDD+
Sbjct: 343 IEDVLSGKINTEDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 384
Score = 50.1 bits (118), Expect = 2e-05
Identities = 19/32 (59%), Positives = 24/32 (74%)
Frame = -1
Query: 415 DSLSDGSSSDDDDDDDDSEDEDDDDNEDDDDE 320
D D DDDDDDDD +D+DDDD++DDDD+
Sbjct: 356 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 387
Score = 40.0 bits (92), Expect = 0.016
Identities = 19/60 (31%), Positives = 33/60 (54%), Gaps = 1/60 (1%)
Frame = -1
Query: 496 GLLRFWDFNDATKPFTKIEDCPSSR-FWDSLSDGSSSDDDDDDDDSEDEDDDDNEDDDDE 320
G++ D + +D P++ D + D S + +DDD +D+DDDD++DDDD+
Sbjct: 313 GIVNVTDADSVWMEIRDDDDLPTAEELEDWIEDVLSGKINTEDDDDDDDDDDDDDDDDDD 372
>sp|P19204|CAQ1_CHICK Calsequestrin, skeletal muscle isoform precursor (Calsequestrin 1)
(Aspartactin) (Laminin-binding protein)
gi|86334|pir||A31050 calsequestrin precursor, cardiac
and skeletal muscle - chicken gi|63562|emb|CAA68743.1|
calsequestrin homologue (AA-19 to 387) [Gallus gallus]
Length = 406
Score = 52.4 bits (124), Expect = 3e-06
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = -1
Query: 445 IEDCPSSRFWDSLSDGSSSDDDDDDDDSEDEDDDDNEDDDDE 320
IED S + D DDDDDDDD +D+DDDD++DDDD+
Sbjct: 362 IEDVLSGKINTEDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 403
Score = 50.1 bits (118), Expect = 2e-05
Identities = 19/32 (59%), Positives = 24/32 (74%)
Frame = -1
Query: 415 DSLSDGSSSDDDDDDDDSEDEDDDDNEDDDDE 320
D D DDDDDDDD +D+DDDD++DDDD+
Sbjct: 375 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 406
Score = 40.0 bits (92), Expect = 0.016
Identities = 19/60 (31%), Positives = 33/60 (54%), Gaps = 1/60 (1%)
Frame = -1
Query: 496 GLLRFWDFNDATKPFTKIEDCPSSR-FWDSLSDGSSSDDDDDDDDSEDEDDDDNEDDDDE 320
G++ D + +D P++ D + D S + +DDD +D+DDDD++DDDD+
Sbjct: 332 GIVNVTDADSVWMEIRDDDDLPTAEELEDWIEDVLSGKINTEDDDDDDDDDDDDDDDDDD 391
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,235,889
Number of Sequences: 1393205
Number of extensions: 9054084
Number of successful extensions: 362556
Number of sequences better than 10.0: 5272
Number of HSP's better than 10.0 without gapping: 68387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202993
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
