Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001518A_C01 KMC001518A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07061 L-lactate dehydrogenase (EC 1.1.1.27) chain 1 - toma... 150 9e-36
pir||T07063 L-lactate dehydrogenase (EC 1.1.1.27) 2 - tomato gi|... 145 5e-34
pir||T07006 L-lactate dehydrogenase (EC 1.1.1.27) chain LDH-2a -... 143 1e-33
pir||T07005 L-lactate dehydrogenase (EC 1.1.1.27) chain B - pota... 143 1e-33
ref|NP_193459.1| lactate dehydrogenase (LDH1); protein id: At4g1... 137 8e-32
>pir||T07061 L-lactate dehydrogenase (EC 1.1.1.27) chain 1 - tomato
gi|1620970|emb|CAA70100.1| L-lactate dehydrogenase
[Lycopersicon esculentum] gi|1806117|emb|CAA71611.1|
L-lactate dehydrogenase [Lycopersicon esculentum]
Length = 350
Score = 150 bits (380), Expect = 9e-36
Identities = 77/95 (81%), Positives = 86/95 (90%)
Frame = -1
Query: 594 YEVISLKGYTSWAIGYSVASLARSILRDQRKIDPVSVLAKGFYGIGDAEVFLSLPAQLGR 415
YEVISLKGYTSWAIGYSVA+LAR+ILRDQR+I PVSVLAKGFYGI +VFLSLPAQLGR
Sbjct: 256 YEVISLKGYTSWAIGYSVANLARTILRDQRRIHPVSVLAKGFYGIDGGDVFLSLPAQLGR 315
Query: 414 GGVLGVTHVHLNEEEEQRLRDSAKAILEVQSQLEI 310
GVLGVT+VHL +EE ++LR+SAK ILEVQSQL I
Sbjct: 316 SGVLGVTNVHLTDEEIEQLRNSAKTILEVQSQLGI 350
>pir||T07063 L-lactate dehydrogenase (EC 1.1.1.27) 2 - tomato
gi|1620972|emb|CAA70101.1| L-lactate dehydrogenase
[Lycopersicon esculentum]
Length = 347
Score = 145 bits (365), Expect = 5e-34
Identities = 73/95 (76%), Positives = 85/95 (88%)
Frame = -1
Query: 594 YEVISLKGYTSWAIGYSVASLARSILRDQRKIDPVSVLAKGFYGIGDAEVFLSLPAQLGR 415
YEVI+LKGYTSWAIGYSVA+LA SI+RDQR+I PVS+LAKGFYGI +VFLSLPAQLGR
Sbjct: 253 YEVINLKGYTSWAIGYSVANLAFSIIRDQRRIHPVSILAKGFYGIDGGDVFLSLPAQLGR 312
Query: 414 GGVLGVTHVHLNEEEEQRLRDSAKAILEVQSQLEI 310
GVLGVT+VHL +EE Q+LR+SA+ ILEVQ+QL I
Sbjct: 313 NGVLGVTNVHLTDEEIQQLRNSAETILEVQNQLGI 347
>pir||T07006 L-lactate dehydrogenase (EC 1.1.1.27) chain LDH-2a - potato
(fragment) gi|3212005|gb|AAC21565.1| lactate
dehydrogenase-2a [Solanum tuberosum]
Length = 224
Score = 143 bits (361), Expect = 1e-33
Identities = 72/95 (75%), Positives = 84/95 (87%)
Frame = -1
Query: 594 YEVISLKGYTSWAIGYSVASLARSILRDQRKIDPVSVLAKGFYGIGDAEVFLSLPAQLGR 415
YEVI+LKGYTSWAIGYSVA+LA SI+RDQR+I PVS+L KGFYGI +VFLSLPAQLGR
Sbjct: 130 YEVINLKGYTSWAIGYSVANLAFSIIRDQRRIHPVSILVKGFYGIDGGDVFLSLPAQLGR 189
Query: 414 GGVLGVTHVHLNEEEEQRLRDSAKAILEVQSQLEI 310
GVLGVT+VHL +EE Q+LR+SA+ ILEVQ+QL I
Sbjct: 190 SGVLGVTNVHLTDEEIQQLRNSAETILEVQNQLGI 224
>pir||T07005 L-lactate dehydrogenase (EC 1.1.1.27) chain B - potato
gi|3212003|gb|AAC21564.1| lactate dehydrogenase-2
[Solanum tuberosum]
Length = 346
Score = 143 bits (361), Expect = 1e-33
Identities = 72/95 (75%), Positives = 84/95 (87%)
Frame = -1
Query: 594 YEVISLKGYTSWAIGYSVASLARSILRDQRKIDPVSVLAKGFYGIGDAEVFLSLPAQLGR 415
YEVI+LKGYTSWAIGYSVA+LA SI+RDQR+I PVS+L KGFYGI +VFLSLPAQLGR
Sbjct: 252 YEVINLKGYTSWAIGYSVANLAFSIIRDQRRIHPVSILVKGFYGIDGGDVFLSLPAQLGR 311
Query: 414 GGVLGVTHVHLNEEEEQRLRDSAKAILEVQSQLEI 310
GVLGVT+VHL +EE Q+LR+SA+ ILEVQ+QL I
Sbjct: 312 SGVLGVTNVHLTDEEIQQLRNSAETILEVQNQLGI 346
>ref|NP_193459.1| lactate dehydrogenase (LDH1); protein id: At4g17260.1, supported by
cDNA: 33509. [Arabidopsis thaliana]
gi|7431146|pir||F71441 L-lactate dehydrogenase (EC
1.1.1.27) - Arabidopsis thaliana
gi|2245085|emb|CAB10507.1| lactate dehydrogenase
[Arabidopsis thaliana] gi|7268478|emb|CAB78729.1|
lactate dehydrogenase [Arabidopsis thaliana]
Length = 353
Score = 137 bits (346), Expect = 8e-32
Identities = 67/93 (72%), Positives = 81/93 (87%)
Frame = -1
Query: 594 YEVISLKGYTSWAIGYSVASLARSILRDQRKIDPVSVLAKGFYGIGDAEVFLSLPAQLGR 415
YEVI LKGYTSWAIGYSVA+LAR+ILRDQRKI PV+VLA+GFYG+ +VFLSLPA LGR
Sbjct: 259 YEVIGLKGYTSWAIGYSVANLARTILRDQRKIHPVTVLARGFYGVDGGDVFLSLPALLGR 318
Query: 414 GGVLGVTHVHLNEEEEQRLRDSAKAILEVQSQL 316
GV+ VT+VH+ +EE ++L+ SAK ILE+QSQL
Sbjct: 319 NGVVAVTNVHMTDEEAEKLQKSAKTILEMQSQL 351
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,979,829
Number of Sequences: 1393205
Number of extensions: 12544249
Number of successful extensions: 35083
Number of sequences better than 10.0: 368
Number of HSP's better than 10.0 without gapping: 33315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34874
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
