Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001516A_C01 KMC001516A_c01
(483 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177671.1| wound-responsive protein, putative; protein id:... 66 2e-10
dbj|BAA95791.1| wound inducive gene [Nicotiana tabacum] 64 1e-09
gb|AAM65561.1| wound-responsive protein, putative [Arabidopsis t... 64 1e-09
ref|NP_564093.1| expressed protein; protein id: At1g19660.1, sup... 64 1e-09
pir||D86329 F14P1.1 protein - Arabidopsis thaliana gi|9795589|gb... 50 2e-05
>ref|NP_177671.1| wound-responsive protein, putative; protein id: At1g75380.1,
supported by cDNA: 35182., supported by cDNA:
gi_15809928, supported by cDNA: gi_17978880 [Arabidopsis
thaliana] gi|25406432|pir||C96784 hypothetical protein
F1B16.9 [imported] - Arabidopsis thaliana
gi|10120446|gb|AAG13071.1|AC023754_9 Unknown protein
[Arabidopsis thaliana] gi|15809929|gb|AAL06892.1|
At1g75380/F1B16_15 [Arabidopsis thaliana]
gi|17978881|gb|AAL47412.1| At1g75380/F1B16_15
[Arabidopsis thaliana] gi|21593016|gb|AAM64965.1|
wound-responsive protein, putative [Arabidopsis
thaliana]
Length = 325
Score = 66.2 bits (160), Expect = 2e-10
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = -3
Query: 481 RPNGQPCVETEEFNLLHNMLKAVGEERYKDAALWRDRLNQLRAGKNV 341
RPNGQ C++T+EFN+L M++AV EERY +AA WRD+L Q RA +N+
Sbjct: 275 RPNGQACLDTKEFNILSKMMQAVDEERYDEAAEWRDKLGQFRAKRNL 321
>dbj|BAA95791.1| wound inducive gene [Nicotiana tabacum]
Length = 317
Score = 63.5 bits (153), Expect = 1e-09
Identities = 30/46 (65%), Positives = 35/46 (75%)
Frame = -3
Query: 481 RPNGQPCVETEEFNLLHNMLKAVGEERYKDAALWRDRLNQLRAGKN 344
RP GQP +E +EF L+ NML A EERY DAALWRD+L QLR+ KN
Sbjct: 270 RPTGQPSIEAKEFILVRNMLVAAVEERYTDAALWRDQLMQLRSEKN 315
>gb|AAM65561.1| wound-responsive protein, putative [Arabidopsis thaliana]
Length = 329
Score = 63.5 bits (153), Expect = 1e-09
Identities = 26/47 (55%), Positives = 38/47 (80%)
Frame = -3
Query: 481 RPNGQPCVETEEFNLLHNMLKAVGEERYKDAALWRDRLNQLRAGKNV 341
RPNGQPC +T+EF+L+ NM++AV EERY +AA WRD+L + +A + +
Sbjct: 279 RPNGQPCFDTKEFDLVRNMMQAVDEERYDEAAEWRDKLGKFQAKRKL 325
>ref|NP_564093.1| expressed protein; protein id: At1g19660.1, supported by cDNA:
40419., supported by cDNA: gi_14334685, supported by
cDNA: gi_16323387 [Arabidopsis thaliana]
gi|14334686|gb|AAK59521.1| unknown protein [Arabidopsis
thaliana] gi|16323388|gb|AAL15188.1| unknown protein
[Arabidopsis thaliana]
Length = 329
Score = 63.5 bits (153), Expect = 1e-09
Identities = 26/47 (55%), Positives = 38/47 (80%)
Frame = -3
Query: 481 RPNGQPCVETEEFNLLHNMLKAVGEERYKDAALWRDRLNQLRAGKNV 341
RPNGQPC +T+EF+L+ NM++AV EERY +AA WRD+L + +A + +
Sbjct: 279 RPNGQPCFDTKEFDLVRNMMQAVDEERYDEAAEWRDKLGKFQAKRKL 325
>pir||D86329 F14P1.1 protein - Arabidopsis thaliana
gi|9795589|gb|AAF98407.1|AC024609_8 Unknown protein
[Arabidopsis thaliana]
Length = 329
Score = 49.7 bits (117), Expect = 2e-05
Identities = 20/31 (64%), Positives = 27/31 (86%)
Frame = -3
Query: 481 RPNGQPCVETEEFNLLHNMLKAVGEERYKDA 389
RPNGQPC +T+EF+L+ NM++AV EERY +A
Sbjct: 279 RPNGQPCFDTKEFDLVRNMMQAVDEERYDEA 309
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,040,555
Number of Sequences: 1393205
Number of extensions: 8461942
Number of successful extensions: 16667
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16663
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
