Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001512A_C02 KMC001512A_c02
(699 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL16064.1|AF420238_1 S-adenosyl-L-methionine synthetase [Den... 241 7e-63
gb|AAK29410.1|AF346306_1 S-adenosyl-L-methionine synthetase [Ela... 237 1e-61
sp|P31156|METL_PETCR S-adenosylmethionine synthetase 2 (Methioni... 236 3e-61
sp|P43281|METL_LYCES S-adenosylmethionine synthetase 2 (Methioni... 235 4e-61
sp|P50303|METM_ACTCH S-adenosylmethionine synthetase 3 (Methioni... 234 9e-61
>gb|AAL16064.1|AF420238_1 S-adenosyl-L-methionine synthetase [Dendrobium crumenatum]
Length = 395
Score = 241 bits (615), Expect = 7e-63
Identities = 115/124 (92%), Positives = 121/124 (96%)
Frame = -2
Query: 698 AFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKI 519
AFSGKDPTKVDRSGAYIVRQAAKS+VANGLARRCIVQVSYAIGVPEPLSVFVD+YGTGKI
Sbjct: 272 AFSGKDPTKVDRSGAYIVRQAAKSVVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKI 331
Query: 518 PDKEILQIVKETFDFRPGMISINLDLKRGGNRFLKTAAYGHFGRDDTDFTWEVVKPLKWE 339
PDKEIL+IVKE FDFRPGMI+INLDLKRGGNRF+KTAAYGHFGRDD DFTWEVVKPLKW+
Sbjct: 332 PDKEILKIVKENFDFRPGMITINLDLKRGGNRFIKTAAYGHFGRDDPDFTWEVVKPLKWD 391
Query: 338 KPTA 327
KP A
Sbjct: 392 KPAA 395
>gb|AAK29410.1|AF346306_1 S-adenosyl-L-methionine synthetase [Elaeagnus umbellata]
Length = 393
Score = 237 bits (604), Expect = 1e-61
Identities = 116/123 (94%), Positives = 120/123 (97%), Gaps = 1/123 (0%)
Frame = -2
Query: 698 AFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKI 519
AFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVP+PLSVFVDSYGTGKI
Sbjct: 269 AFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPDPLSVFVDSYGTGKI 328
Query: 518 PDKEILQIVKETFDFRPGMISINLDLKRGGN-RFLKTAAYGHFGRDDTDFTWEVVKPLKW 342
PDKEIL+IVKE FDFRPGMI+INLDLKRGGN RFLKTAAYGHFGRDD DFTWE+VKPLKW
Sbjct: 329 PDKEILKIVKENFDFRPGMITINLDLKRGGNDRFLKTAAYGHFGRDDPDFTWEIVKPLKW 388
Query: 341 EKP 333
EKP
Sbjct: 389 EKP 391
>sp|P31156|METL_PETCR S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase
2) (AdoMet synthetase 2) gi|169667|gb|AAA33858.1|
S-adenosylmethionine synthetase
Length = 145
Score = 236 bits (601), Expect = 3e-61
Identities = 117/122 (95%), Positives = 120/122 (97%), Gaps = 1/122 (0%)
Frame = -2
Query: 698 AFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKI 519
AFSGKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVDSYGTGKI
Sbjct: 23 AFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKI 82
Query: 518 PDKEILQIVKETFDFRPGMISINLDLKRGGN-RFLKTAAYGHFGRDDTDFTWEVVKPLKW 342
PD+EILQIVKETFDFRPGMISINLDLKRGGN RFLKTAAYGHFGR+D DFTWEVVKPLKW
Sbjct: 83 PDREILQIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKW 142
Query: 341 EK 336
EK
Sbjct: 143 EK 144
>sp|P43281|METL_LYCES S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase
2) (AdoMet synthetase 2) gi|481566|pir||S38875
methionine adenosyltransferase (EC 2.5.1.6) - tomato
gi|429106|emb|CAA80866.1| S-adenosyl-L-methionine
synthetase [Lycopersicon esculentum]
Length = 393
Score = 235 bits (600), Expect = 4e-61
Identities = 117/125 (93%), Positives = 119/125 (94%), Gaps = 1/125 (0%)
Frame = -2
Query: 698 AFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKI 519
AFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVD+YGTGKI
Sbjct: 269 AFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKI 328
Query: 518 PDKEILQIVKETFDFRPGMISINLDLKRGGN-RFLKTAAYGHFGRDDTDFTWEVVKPLKW 342
PDKEIL IVKE FDFRPGMISINLDL RGGN RFLKTAAYGHFGRDD DFTWEVVKPLKW
Sbjct: 329 PDKEILNIVKENFDFRPGMISINLDLLRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 388
Query: 341 EKPTA 327
+KP A
Sbjct: 389 DKPEA 393
>sp|P50303|METM_ACTCH S-adenosylmethionine synthetase 3 (Methionine adenosyltransferase
3) (AdoMet synthetase 3) gi|726032|gb|AAA81379.1|
S-adenosylmethionine synthetase [Actinidia chinensis]
Length = 360
Score = 234 bits (597), Expect = 9e-61
Identities = 115/123 (93%), Positives = 121/123 (97%), Gaps = 1/123 (0%)
Frame = -2
Query: 698 AFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKI 519
AFSGKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKI
Sbjct: 236 AFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKI 295
Query: 518 PDKEILQIVKETFDFRPGMISINLDLKRGGN-RFLKTAAYGHFGRDDTDFTWEVVKPLKW 342
PDKEIL+IVKE+FDFRPGMI+I+LDLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLKW
Sbjct: 296 PDKEILKIVKESFDFRPGMIAIHLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKW 355
Query: 341 EKP 333
EKP
Sbjct: 356 EKP 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 649,690,799
Number of Sequences: 1393205
Number of extensions: 15236090
Number of successful extensions: 45172
Number of sequences better than 10.0: 260
Number of HSP's better than 10.0 without gapping: 41835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44647
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
