Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001496A_C01 KMC001496A_c01
(389 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190736.1| short-chain alcohol dehydrogenase-like protein;... 100 6e-21
gb|AAB57737.1| short-chain alcohol dehydrogenase [Tripsacum dact... 91 3e-18
sp|P50160|TS2_MAIZE SEX DETERMINATION PROTEIN TASSELSEED 2 gi|53... 91 3e-18
ref|NP_189570.2| short-chain alcohol dehydrogenase, putative; pr... 71 3e-12
dbj|BAB01821.1| alcohol dehydrogenase-like protein [Arabidopsis ... 71 3e-12
>ref|NP_190736.1| short-chain alcohol dehydrogenase-like protein; protein id:
At3g51680.1 [Arabidopsis thaliana]
gi|11250813|pir||T46064 short-chain alcohol
dehydrogenase-like protein - Arabidopsis thaliana
gi|6580150|emb|CAB63154.1| short-chain alcohol
dehydrogenase-like protein [Arabidopsis thaliana]
Length = 303
Score = 100 bits (248), Expect = 6e-21
Identities = 48/61 (78%), Positives = 56/61 (91%)
Frame = -1
Query: 389 EEVEKMEEFVRGLANLKGTTLKAKHVAEAALYLASDESKYVSGHNLVVDGGVTSSINCVG 210
++VE+MEEFVR LANLKG TL+A +AEAALYLASDESKYV+GHNLVVDGGVT++ NCVG
Sbjct: 243 DDVEEMEEFVRSLANLKGETLRANDIAEAALYLASDESKYVNGHNLVVDGGVTTARNCVG 302
Query: 209 L 207
L
Sbjct: 303 L 303
>gb|AAB57737.1| short-chain alcohol dehydrogenase [Tripsacum dactyloides]
Length = 331
Score = 91.3 bits (225), Expect = 3e-18
Identities = 43/61 (70%), Positives = 53/61 (86%)
Frame = -1
Query: 389 EEVEKMEEFVRGLANLKGTTLKAKHVAEAALYLASDESKYVSGHNLVVDGGVTSSINCVG 210
+EVEKMEE VRGLA LKG TL+ + +AEA L+LASDE++Y+SGHNLVVDGGVT+S N +G
Sbjct: 271 QEVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVTTSRNLIG 330
Query: 209 L 207
L
Sbjct: 331 L 331
>sp|P50160|TS2_MAIZE SEX DETERMINATION PROTEIN TASSELSEED 2 gi|539065|pir||A47542
short-chain alcohol dehydrogenase (EC 1.1.1.-) - maize
gi|393184|gb|AAC37345.1| alcohol dehydrogenase
Length = 336
Score = 91.3 bits (225), Expect = 3e-18
Identities = 43/61 (70%), Positives = 53/61 (86%)
Frame = -1
Query: 389 EEVEKMEEFVRGLANLKGTTLKAKHVAEAALYLASDESKYVSGHNLVVDGGVTSSINCVG 210
+EVEKMEE VRGLA LKG TL+ + +AEA L+LASDE++Y+SGHNLVVDGGVT+S N +G
Sbjct: 276 QEVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVTTSRNLIG 335
Query: 209 L 207
L
Sbjct: 336 L 336
>ref|NP_189570.2| short-chain alcohol dehydrogenase, putative; protein id:
At3g29250.1 [Arabidopsis thaliana]
Length = 379
Score = 71.2 bits (173), Expect = 3e-12
Identities = 33/51 (64%), Positives = 41/51 (79%)
Frame = -1
Query: 389 EEVEKMEEFVRGLANLKGTTLKAKHVAEAALYLASDESKYVSGHNLVVDGG 237
E V+ +EE+ L NLKG LKA+H+AEAAL+LASD+S Y+SG NLVVDGG
Sbjct: 320 EAVKMLEEYGEALGNLKGVVLKARHIAEAALFLASDDSVYISGQNLVVDGG 370
>dbj|BAB01821.1| alcohol dehydrogenase-like protein [Arabidopsis thaliana]
Length = 296
Score = 71.2 bits (173), Expect = 3e-12
Identities = 33/51 (64%), Positives = 41/51 (79%)
Frame = -1
Query: 389 EEVEKMEEFVRGLANLKGTTLKAKHVAEAALYLASDESKYVSGHNLVVDGG 237
E V+ +EE+ L NLKG LKA+H+AEAAL+LASD+S Y+SG NLVVDGG
Sbjct: 237 EAVKMLEEYGEALGNLKGVVLKARHIAEAALFLASDDSVYISGQNLVVDGG 287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 292,285,864
Number of Sequences: 1393205
Number of extensions: 5163387
Number of successful extensions: 14703
Number of sequences better than 10.0: 908
Number of HSP's better than 10.0 without gapping: 14091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14693
length of database: 448,689,247
effective HSP length: 105
effective length of database: 302,402,722
effective search space used: 7257665328
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
