Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001495A_C01 KMC001495A_c01
(754 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190019.1| putative protein; protein id: At3g44330.1 [Arab... 111 1e-23
gb|AAM29385.1| RE02878p [Drosophila melanogaster] 45 0.001
ref|NP_609378.1| CG4972-PA [Drosophila melanogaster] gi|22946132... 45 0.001
ref|XP_234929.1| similar to RIKEN cDNA 3100002P13 [Mus musculus]... 36 0.68
gb|AAH19501.1| RIKEN cDNA 3100002P13 gene [Mus musculus] 36 0.68
>ref|NP_190019.1| putative protein; protein id: At3g44330.1 [Arabidopsis thaliana]
gi|11358200|pir||T47423 hypothetical protein T22K7.10 -
Arabidopsis thaliana gi|7529767|emb|CAB86911.1| putative
protein [Arabidopsis thaliana]
Length = 565
Score = 111 bits (278), Expect = 1e-23
Identities = 56/62 (90%), Positives = 59/62 (94%)
Frame = -1
Query: 754 TFYDSTRAKLNIYQVASVAFDLLLLIVLGSYLIVLFTFLFITTRGLDDLISLFRRPPSRK 575
TFYDST+A LNIYQVASV FDLLLL+VLGSYLIVLF+FL ITTRGLDDLISLFRRPPSRK
Sbjct: 502 TFYDSTKASLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRK 561
Query: 574 VK 569
VK
Sbjct: 562 VK 563
>gb|AAM29385.1| RE02878p [Drosophila melanogaster]
Length = 561
Score = 44.7 bits (104), Expect = 0.001
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -1
Query: 751 FYDSTRAKLNIYQVASVAFDLLLLIVLGSYLIVLFTFLFITTRGLDDLISLFRRPPS 581
FY+ KLN+Y+V FDL L V+G+YL+ +F + R D++ L + P+
Sbjct: 489 FYNENEVKLNVYRVKPAIFDLFLTFVIGAYLLAVFLAIQYFPRFYDEVSELTKEDPA 545
>ref|NP_609378.1| CG4972-PA [Drosophila melanogaster] gi|22946132|gb|AAF52909.2|
CG4972-PA [Drosophila melanogaster]
Length = 561
Score = 44.7 bits (104), Expect = 0.001
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -1
Query: 751 FYDSTRAKLNIYQVASVAFDLLLLIVLGSYLIVLFTFLFITTRGLDDLISLFRRPPS 581
FY+ KLN+Y+V FDL L V+G+YL+ +F + R D++ L + P+
Sbjct: 489 FYNENEVKLNVYRVKPAIFDLFLTFVIGAYLLAVFLAIQYFPRFYDEVSKLTKEDPA 545
>ref|XP_234929.1| similar to RIKEN cDNA 3100002P13 [Mus musculus] [Rattus norvegicus]
Length = 709
Score = 35.8 bits (81), Expect = 0.68
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1
Query: 751 FYDSTRAKLNIYQVASVAFDLLLLIVLGSYLIVLFT 644
FYD + +N Y+V FDLLL + +G+YL + +T
Sbjct: 652 FYDQLKQVMNAYRVKPAIFDLLLALCIGAYLGMAYT 687
>gb|AAH19501.1| RIKEN cDNA 3100002P13 gene [Mus musculus]
Length = 513
Score = 35.8 bits (81), Expect = 0.68
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1
Query: 751 FYDSTRAKLNIYQVASVAFDLLLLIVLGSYLIVLFT 644
FYD + +N Y+V FDLLL + +G+YL + +T
Sbjct: 456 FYDQLKQVMNAYRVKPAIFDLLLALCIGAYLGMAYT 491
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,662,231
Number of Sequences: 1393205
Number of extensions: 10385087
Number of successful extensions: 22756
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 21949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22727
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36595604110
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
