Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001482A_C03 KMC001482A_c03
(716 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05726 GH1 protein - soybean (fragment) gi|2388689|gb|AAB70... 178 6e-44
emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremu... 175 6e-43
gb|AAM12952.1| auxin-regulated protein [Zinnia elegans] 173 2e-42
emb|CAD10639.1| IAA9 protein [Nicotiana tabacum] 171 9e-42
gb|AAM29182.1| Aux/IAA protein [Solanum tuberosum] 169 3e-41
>pir||T05726 GH1 protein - soybean (fragment) gi|2388689|gb|AAB70005.1| GH1
protein [Glycine max]
Length = 339
Score = 178 bits (452), Expect = 6e-44
Identities = 86/98 (87%), Positives = 93/98 (94%), Gaps = 1/98 (1%)
Frame = -3
Query: 714 TYQELSSALEKMF-SCFTLGQCGSHGAPGRELLSESKLRDLLHGSEYVLSYEDKDGDWML 538
TYQELSSALEKMF SCFTLGQCGSHGAPGRE+LSESKLRDLLHGSEYVL+YEDKDGDWML
Sbjct: 241 TYQELSSALEKMFLSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWML 300
Query: 537 VGDVPWEMFTETCRRLKIMKGSDAIGLAPRAHGKVQNQ 424
VGDVPWEMF +TC+RLKIMKGSDAIGLAPRA K +++
Sbjct: 301 VGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSR 338
>emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremuloides]
Length = 365
Score = 175 bits (443), Expect = 6e-43
Identities = 82/96 (85%), Positives = 90/96 (93%)
Frame = -3
Query: 711 YQELSSALEKMFSCFTLGQCGSHGAPGRELLSESKLRDLLHGSEYVLSYEDKDGDWMLVG 532
YQELSSALEKMFSCFT+GQ GSHGAPGRE+LSESKL+DLLHGSEYVL+YEDKDGDWMLVG
Sbjct: 269 YQELSSALEKMFSCFTIGQYGSHGAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVG 328
Query: 531 DVPWEMFTETCRRLKIMKGSDAIGLAPRAHGKVQNQ 424
DVPWEMF ETC+RL+IMK SDAIGLAPRA K +N+
Sbjct: 329 DVPWEMFIETCKRLRIMKSSDAIGLAPRAMEKCKNR 364
>gb|AAM12952.1| auxin-regulated protein [Zinnia elegans]
Length = 351
Score = 173 bits (439), Expect = 2e-42
Identities = 81/97 (83%), Positives = 90/97 (92%)
Frame = -3
Query: 714 TYQELSSALEKMFSCFTLGQCGSHGAPGRELLSESKLRDLLHGSEYVLSYEDKDGDWMLV 535
TYQ+LSSA+EKMFSCFT+GQCGS GAPGRE LSESKLRDLLHGSEYVL+YEDKDGDWMLV
Sbjct: 254 TYQQLSSAIEKMFSCFTIGQCGSQGAPGRESLSESKLRDLLHGSEYVLTYEDKDGDWMLV 313
Query: 534 GDVPWEMFTETCRRLKIMKGSDAIGLAPRAHGKVQNQ 424
GDVPW+MF +C+RLKIMKGSDAIGLAPRA K +N+
Sbjct: 314 GDVPWDMFIGSCKRLKIMKGSDAIGLAPRAMEKSKNR 350
>emb|CAD10639.1| IAA9 protein [Nicotiana tabacum]
Length = 346
Score = 171 bits (433), Expect = 9e-42
Identities = 79/96 (82%), Positives = 90/96 (93%)
Frame = -3
Query: 711 YQELSSALEKMFSCFTLGQCGSHGAPGRELLSESKLRDLLHGSEYVLSYEDKDGDWMLVG 532
YQELSSALEKMFSCFT+GQ GSHGAPG+E+LSES+L+DLLHGSEYVL+YEDKDGDWMLVG
Sbjct: 250 YQELSSALEKMFSCFTIGQYGSHGAPGKEMLSESQLKDLLHGSEYVLTYEDKDGDWMLVG 309
Query: 531 DVPWEMFTETCRRLKIMKGSDAIGLAPRAHGKVQNQ 424
DVPWEMF ETC+RL+IMKGSDAIGLAPR K +++
Sbjct: 310 DVPWEMFIETCKRLRIMKGSDAIGLAPRGMEKCRSR 345
>gb|AAM29182.1| Aux/IAA protein [Solanum tuberosum]
Length = 349
Score = 169 bits (429), Expect = 3e-41
Identities = 78/96 (81%), Positives = 90/96 (93%)
Frame = -3
Query: 711 YQELSSALEKMFSCFTLGQCGSHGAPGRELLSESKLRDLLHGSEYVLSYEDKDGDWMLVG 532
YQELSSALE MFSCFT+GQ GSHGAPG+++LSESKL+DLLHGSEYVL+YEDKDGDWMLVG
Sbjct: 253 YQELSSALETMFSCFTIGQYGSHGAPGKDMLSESKLKDLLHGSEYVLTYEDKDGDWMLVG 312
Query: 531 DVPWEMFTETCRRLKIMKGSDAIGLAPRAHGKVQNQ 424
DVPWEMF +TC+RL+IMKGSDAIGLAPRA K +++
Sbjct: 313 DVPWEMFIDTCKRLRIMKGSDAIGLAPRAMEKCRSR 348
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 621,437,616
Number of Sequences: 1393205
Number of extensions: 13457496
Number of successful extensions: 31095
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 29971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31044
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
