Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001474A_C01 KMC001474A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568252.1| diaminopimelate decarboxylase - like protein; p... 160 1e-38
dbj|BAB01044.1| contains similarity to diaminopimelate decarboxy... 160 1e-38
ref|NP_188056.1| putative diaminopimelate decarboxylase; protein... 160 1e-38
emb|CAB62550.1| diaminopimelate decarboxylase [Arabidopsis thali... 160 1e-38
pir||T48547 diaminopimelate decarboxylase-like protein - Arabido... 160 1e-38
>ref|NP_568252.1| diaminopimelate decarboxylase - like protein; protein id:
At5g11880.1, supported by cDNA: 96020., supported by
cDNA: gi_15146249 [Arabidopsis thaliana]
gi|15146250|gb|AAK83608.1| AT5g11880/F14F18_50
[Arabidopsis thaliana] gi|22655428|gb|AAM98306.1|
At5g11880/F14F18_50 [Arabidopsis thaliana]
Length = 489
Score = 160 bits (404), Expect = 1e-38
Identities = 73/89 (82%), Positives = 79/89 (88%)
Frame = -3
Query: 561 PENAETATFDVVGPVCESADFLGKERELQTPAQGTGLVVHDAGAYCMSMASTYNLKMRPP 382
P AE FDVVGPVCESADFLGK+REL TP QG GLVVHDAGAYCMSMASTYNLKMRPP
Sbjct: 401 PPEAEVTKFDVVGPVCESADFLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPP 460
Query: 381 EYWVEDDGSVSKIRPGETFEDHIRFFEGL 295
EYWVE+DGS++KIR ETF+DH+RFFEGL
Sbjct: 461 EYWVEEDGSITKIRHAETFDDHLRFFEGL 489
>dbj|BAB01044.1| contains similarity to diaminopimelate
decarboxylase~gene_id:MLN21.17 [Arabidopsis thaliana]
Length = 526
Score = 160 bits (404), Expect = 1e-38
Identities = 73/89 (82%), Positives = 79/89 (88%)
Frame = -3
Query: 561 PENAETATFDVVGPVCESADFLGKERELQTPAQGTGLVVHDAGAYCMSMASTYNLKMRPP 382
P AE FDVVGPVCESADFLGK+REL TP QG GLVVHDAGAYCMSMASTYNLKMRPP
Sbjct: 438 PAEAEVTKFDVVGPVCESADFLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPP 497
Query: 381 EYWVEDDGSVSKIRPGETFEDHIRFFEGL 295
EYWVE+DGS++KIR ETF+DH+RFFEGL
Sbjct: 498 EYWVEEDGSITKIRHAETFDDHLRFFEGL 526
>ref|NP_188056.1| putative diaminopimelate decarboxylase; protein id: At3g14390.1,
supported by cDNA: 6579., supported by cDNA:
gi_15292778, supported by cDNA: gi_18026844 [Arabidopsis
thaliana] gi|15292779|gb|AAK92758.1| putative
diaminopimelate decarboxylase [Arabidopsis thaliana]
gi|18026845|gb|AAL55653.1|AF227913_1 diaminopimelate
decarboxylase [Arabidopsis thaliana]
gi|21594037|gb|AAM65955.1| putative diaminopimelate
decarboxylase [Arabidopsis thaliana]
gi|21689775|gb|AAM67531.1| putative diaminopimelate
decarboxylase [Arabidopsis thaliana]
Length = 484
Score = 160 bits (404), Expect = 1e-38
Identities = 73/89 (82%), Positives = 79/89 (88%)
Frame = -3
Query: 561 PENAETATFDVVGPVCESADFLGKERELQTPAQGTGLVVHDAGAYCMSMASTYNLKMRPP 382
P AE FDVVGPVCESADFLGK+REL TP QG GLVVHDAGAYCMSMASTYNLKMRPP
Sbjct: 396 PAEAEVTKFDVVGPVCESADFLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPP 455
Query: 381 EYWVEDDGSVSKIRPGETFEDHIRFFEGL 295
EYWVE+DGS++KIR ETF+DH+RFFEGL
Sbjct: 456 EYWVEEDGSITKIRHAETFDDHLRFFEGL 484
>emb|CAB62550.1| diaminopimelate decarboxylase [Arabidopsis thaliana]
Length = 145
Score = 160 bits (404), Expect = 1e-38
Identities = 73/89 (82%), Positives = 79/89 (88%)
Frame = -3
Query: 561 PENAETATFDVVGPVCESADFLGKERELQTPAQGTGLVVHDAGAYCMSMASTYNLKMRPP 382
P AE FDVVGPVCESADFLGK+REL TP QG GLVVHDAGAYCMSMASTYNLKMRPP
Sbjct: 57 PPEAEVTKFDVVGPVCESADFLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPP 116
Query: 381 EYWVEDDGSVSKIRPGETFEDHIRFFEGL 295
EYWVE+DGS++KIR ETF+DH+RFFEGL
Sbjct: 117 EYWVEEDGSITKIRHAETFDDHLRFFEGL 145
>pir||T48547 diaminopimelate decarboxylase-like protein - Arabidopsis thaliana
gi|7573355|emb|CAB87661.1| diaminopimelate
decarboxylase-like protein [Arabidopsis thaliana]
Length = 496
Score = 160 bits (404), Expect = 1e-38
Identities = 73/89 (82%), Positives = 79/89 (88%)
Frame = -3
Query: 561 PENAETATFDVVGPVCESADFLGKERELQTPAQGTGLVVHDAGAYCMSMASTYNLKMRPP 382
P AE FDVVGPVCESADFLGK+REL TP QG GLVVHDAGAYCMSMASTYNLKMRPP
Sbjct: 408 PPEAEVTKFDVVGPVCESADFLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPP 467
Query: 381 EYWVEDDGSVSKIRPGETFEDHIRFFEGL 295
EYWVE+DGS++KIR ETF+DH+RFFEGL
Sbjct: 468 EYWVEEDGSITKIRHAETFDDHLRFFEGL 496
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,653,438
Number of Sequences: 1393205
Number of extensions: 10207637
Number of successful extensions: 37999
Number of sequences better than 10.0: 186
Number of HSP's better than 10.0 without gapping: 37006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37933
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
