Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001462A_C01 KMC001462A_c01
(823 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196230.1| human RAN binding protein 16-like; protein id: ... 454 e-127
dbj|BAC65643.1| mKIAA0745 protein [Mus musculus] 244 1e-63
ref|NP_075532.1| RAN binding protein 16 [Mus musculus] gi|173688... 244 1e-63
dbj|BAC29182.1| unnamed protein product [Mus musculus] 244 1e-63
dbj|BAC25870.1| unnamed protein product [Mus musculus] 244 1e-63
>ref|NP_196230.1| human RAN binding protein 16-like; protein id: At5g06120.1
[Arabidopsis thaliana] gi|8978348|dbj|BAA98201.1| human
RAN binding protein 16-like [Arabidopsis thaliana]
Length = 1059
Score = 454 bits (1169), Expect = e-127
Identities = 219/274 (79%), Positives = 251/274 (90%)
Frame = +2
Query: 2 LEDSSTLQIFFDYYAISKPPLSKEALECLVRLASVRRSLFTNEAARSKFLAHLMTGTKVI 181
LEDSSTLQIFFDYY ++ PLSKEALECLVRLASVRRSLFTN+A RS FLAHLMTGTK I
Sbjct: 241 LEDSSTLQIFFDYYGSTESPLSKEALECLVRLASVRRSLFTNDATRSNFLAHLMTGTKEI 300
Query: 182 LQTGQGLADHDNYHEFCRLLGRFRVNYQLSELVNVEGYSDWIRLVAEFTLKSLQSWQWAS 361
LQTG+GLADHDNYH FCRLLGRFR+NYQLSELV +EGY +WI+LVAEFTLKSLQSWQWAS
Sbjct: 301 LQTGKGLADHDNYHVFCRLLGRFRLNYQLSELVKMEGYGEWIQLVAEFTLKSLQSWQWAS 360
Query: 362 NSVYYLLGLWSRLVSSVPYLKGDAPSLLDEFVPKITESFITSRFNSVQAGLPDDLSENPL 541
+SVYYLLG+WSRLV+SVPYLKGD+PSLLDEFVPKITE FI SRFNSVQA +PDD +++PL
Sbjct: 361 SSVYYLLGMWSRLVASVPYLKGDSPSLLDEFVPKITEGFIISRFNSVQASVPDDPTDHPL 420
Query: 542 DNAELLQDQLDXFPYLCRFQYESSSLFIINIMEPVLQIYTERARLQVSDNSDLAVIEDKL 721
D E+LQD+LD FPYLCRFQYE + ++IIN MEP+LQ YTER +LQ +DNS+LA+IE KL
Sbjct: 421 DKVEVLQDELDCFPYLCRFQYERTGMYIINTMEPLLQSYTERGQLQFADNSELALIEAKL 480
Query: 722 AWIVHIIAAILKIKQCAGCSVESQEVLDAEISAR 823
+WIVHI+AAI+KIKQC+GCSVE+QEVLDAE+SAR
Sbjct: 481 SWIVHIVAAIVKIKQCSGCSVETQEVLDAELSAR 514
>dbj|BAC65643.1| mKIAA0745 protein [Mus musculus]
Length = 1078
Score = 244 bits (622), Expect = 1e-63
Identities = 128/272 (47%), Positives = 178/272 (65%)
Frame = +2
Query: 8 DSSTLQIFFDYYAISKPPLSKEALECLVRLASVRRSLFTNEAARSKFLAHLMTGTKVILQ 187
DSSTLQ+FFD Y P S L CLV++ASVRRSLF N A R+KFL+HL+ G K IL+
Sbjct: 252 DSSTLQLFFDLYHSIPPSFSPLVLSCLVQIASVRRSLFNN-AERAKFLSHLVDGVKRILE 310
Query: 188 TGQGLADHDNYHEFCRLLGRFRVNYQLSELVNVEGYSDWIRLVAEFTLKSLQSWQWASNS 367
Q L+D +NYHEFCRLL R + NYQL ELV VE Y D IRL+A FT+ SLQ W++A NS
Sbjct: 311 NPQSLSDPNNYHEFCRLLARLKSNYQLGELVKVENYPDVIRLIANFTVTSLQHWEFAPNS 370
Query: 368 VYYLLGLWSRLVSSVPYLKGDAPSLLDEFVPKITESFITSRFNSVQAGLPDDLSENPLDN 547
V+YLL LW RL +SVPY+K P +L+ + P++T+++ITSR SV L D L E+PL++
Sbjct: 371 VHYLLSLWQRLAASVPYVKATEPHMLETYTPEVTKAYITSRLESVHIILRDGL-EDPLED 429
Query: 548 AELLQDQLDXFPYLCRFQYESSSLFIINIMEPVLQIYTERARLQVSDNSDLAVIEDKLAW 727
L+Q QLD + R +YE + ++ + + Q Y E + + D+AV E +L W
Sbjct: 430 TGLVQQQLDQLSTIGRCEYEKTCALLVQLFDQSAQSYQELLQSASASPMDIAVQEGRLTW 489
Query: 728 IVHIIAAILKIKQCAGCSVESQEVLDAEISAR 823
+V+II A++ + + S + Q+ +D E+ R
Sbjct: 490 LVYIIGAVIG-GRVSFASTDEQDAMDGELVCR 520
>ref|NP_075532.1| RAN binding protein 16 [Mus musculus]
gi|17368866|sp|Q9EPK7|RP16_MOUSE Ran-binding protein 16
gi|11544711|emb|CAC17621.1| Ran-binding protein 16 [Mus
musculus] gi|20987392|gb|AAH29702.1| RAN binding protein
16 [Mus musculus]
Length = 1087
Score = 244 bits (622), Expect = 1e-63
Identities = 128/272 (47%), Positives = 178/272 (65%)
Frame = +2
Query: 8 DSSTLQIFFDYYAISKPPLSKEALECLVRLASVRRSLFTNEAARSKFLAHLMTGTKVILQ 187
DSSTLQ+FFD Y P S L CLV++ASVRRSLF N A R+KFL+HL+ G K IL+
Sbjct: 258 DSSTLQLFFDLYHSIPPSFSPLVLSCLVQIASVRRSLFNN-AERAKFLSHLVDGVKRILE 316
Query: 188 TGQGLADHDNYHEFCRLLGRFRVNYQLSELVNVEGYSDWIRLVAEFTLKSLQSWQWASNS 367
Q L+D +NYHEFCRLL R + NYQL ELV VE Y D IRL+A FT+ SLQ W++A NS
Sbjct: 317 NPQSLSDPNNYHEFCRLLARLKSNYQLGELVKVENYPDVIRLIANFTVTSLQHWEFAPNS 376
Query: 368 VYYLLGLWSRLVSSVPYLKGDAPSLLDEFVPKITESFITSRFNSVQAGLPDDLSENPLDN 547
V+YLL LW RL +SVPY+K P +L+ + P++T+++ITSR SV L D L E+PL++
Sbjct: 377 VHYLLSLWQRLAASVPYVKATEPHMLETYTPEVTKAYITSRLESVHIILRDGL-EDPLED 435
Query: 548 AELLQDQLDXFPYLCRFQYESSSLFIINIMEPVLQIYTERARLQVSDNSDLAVIEDKLAW 727
L+Q QLD + R +YE + ++ + + Q Y E + + D+AV E +L W
Sbjct: 436 TGLVQQQLDQLSTIGRCEYEKTCALLVQLFDQSAQSYQELLQSASASPMDIAVQEGRLTW 495
Query: 728 IVHIIAAILKIKQCAGCSVESQEVLDAEISAR 823
+V+II A++ + + S + Q+ +D E+ R
Sbjct: 496 LVYIIGAVIG-GRVSFASTDEQDAMDGELVCR 526
>dbj|BAC29182.1| unnamed protein product [Mus musculus]
Length = 1057
Score = 244 bits (622), Expect = 1e-63
Identities = 128/272 (47%), Positives = 178/272 (65%)
Frame = +2
Query: 8 DSSTLQIFFDYYAISKPPLSKEALECLVRLASVRRSLFTNEAARSKFLAHLMTGTKVILQ 187
DSSTLQ+FFD Y P S L CLV++ASVRRSLF N A R+KFL+HL+ G K IL+
Sbjct: 258 DSSTLQLFFDLYHSIPPSFSPLVLSCLVQIASVRRSLFNN-AERAKFLSHLVDGVKRILE 316
Query: 188 TGQGLADHDNYHEFCRLLGRFRVNYQLSELVNVEGYSDWIRLVAEFTLKSLQSWQWASNS 367
Q L+D +NYHEFCRLL R + NYQL ELV VE Y D IRL+A FT+ SLQ W++A NS
Sbjct: 317 NPQSLSDPNNYHEFCRLLARLKSNYQLGELVKVENYPDVIRLIANFTVTSLQHWEFAPNS 376
Query: 368 VYYLLGLWSRLVSSVPYLKGDAPSLLDEFVPKITESFITSRFNSVQAGLPDDLSENPLDN 547
V+YLL LW RL +SVPY+K P +L+ + P++T+++ITSR SV L D L E+PL++
Sbjct: 377 VHYLLSLWQRLAASVPYVKATEPHMLETYTPEVTKAYITSRLESVHIILRDGL-EDPLED 435
Query: 548 AELLQDQLDXFPYLCRFQYESSSLFIINIMEPVLQIYTERARLQVSDNSDLAVIEDKLAW 727
L+Q QLD + R +YE + ++ + + Q Y E + + D+AV E +L W
Sbjct: 436 TGLVQQQLDQLSTIGRCEYEKTCALLVQLFDQSAQSYQELLQSASASPMDIAVQEGRLTW 495
Query: 728 IVHIIAAILKIKQCAGCSVESQEVLDAEISAR 823
+V+II A++ + + S + Q+ +D E+ R
Sbjct: 496 LVYIIGAVIG-GRVSFASTDEQDAMDGELVCR 526
>dbj|BAC25870.1| unnamed protein product [Mus musculus]
Length = 1035
Score = 244 bits (622), Expect = 1e-63
Identities = 128/272 (47%), Positives = 178/272 (65%)
Frame = +2
Query: 8 DSSTLQIFFDYYAISKPPLSKEALECLVRLASVRRSLFTNEAARSKFLAHLMTGTKVILQ 187
DSSTLQ+FFD Y P S L CLV++ASVRRSLF N A R+KFL+HL+ G K IL+
Sbjct: 206 DSSTLQLFFDLYHSIPPSFSPLVLSCLVQIASVRRSLFNN-AERAKFLSHLVDGVKRILE 264
Query: 188 TGQGLADHDNYHEFCRLLGRFRVNYQLSELVNVEGYSDWIRLVAEFTLKSLQSWQWASNS 367
Q L+D +NYHEFCRLL R + NYQL ELV VE Y D IRL+A FT+ SLQ W++A NS
Sbjct: 265 NPQSLSDPNNYHEFCRLLARLKSNYQLGELVKVENYPDVIRLIANFTVTSLQHWEFAPNS 324
Query: 368 VYYLLGLWSRLVSSVPYLKGDAPSLLDEFVPKITESFITSRFNSVQAGLPDDLSENPLDN 547
V+YLL LW RL +SVPY+K P +L+ + P++T+++ITSR SV L D L E+PL++
Sbjct: 325 VHYLLSLWQRLAASVPYVKATEPHMLETYTPEVTKAYITSRLESVHIILRDGL-EDPLED 383
Query: 548 AELLQDQLDXFPYLCRFQYESSSLFIINIMEPVLQIYTERARLQVSDNSDLAVIEDKLAW 727
L+Q QLD + R +YE + ++ + + Q Y E + + D+AV E +L W
Sbjct: 384 TGLVQQQLDQLSTIGRCEYEKTCALLVQLFDQSAQSYQELLQSASASPMDIAVQEGRLTW 443
Query: 728 IVHIIAAILKIKQCAGCSVESQEVLDAEISAR 823
+V+II A++ + + S + Q+ +D E+ R
Sbjct: 444 LVYIIGAVIG-GRVSFASTDEQDAMDGELVCR 474
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 668,112,422
Number of Sequences: 1393205
Number of extensions: 13848884
Number of successful extensions: 34859
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 33733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34815
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42576939184
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
