Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001458A_C01 KMC001458A_c01
(932 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL49944.1| AT5g49550/K6M13_10 [Arabidopsis thaliana] gi|2902... 108 1e-22
ref|NP_568712.1| phytoene dehydrogenase (phytoene desaturase)(PD... 108 1e-22
dbj|BAB10768.1| phytoene dehydrogenase-like [Arabidopsis thaliana] 100 2e-20
ref|NP_190655.2| putative clathrin coat assembly protein; protei... 84 4e-15
dbj|BAC11507.1| unnamed protein product [Homo sapiens] 78 2e-13
>gb|AAL49944.1| AT5g49550/K6M13_10 [Arabidopsis thaliana]
gi|29028742|gb|AAO64750.1| At5g49550/K6M13_10
[Arabidopsis thaliana]
Length = 556
Score = 108 bits (270), Expect = 1e-22
Identities = 47/54 (87%), Positives = 54/54 (99%)
Frame = +3
Query: 3 LDSLFLMRPVKGWSNYKTPLKGLYLCGSGAHPGGGVMGAPGRNAAHLVLQEVRK 164
LDSLFLMRPVKGWSNY++PLKGLYLCGSGAHPGGGVMGAPGRNAAH+VLQ++++
Sbjct: 502 LDSLFLMRPVKGWSNYRSPLKGLYLCGSGAHPGGGVMGAPGRNAAHVVLQDLKR 555
>ref|NP_568712.1| phytoene dehydrogenase (phytoene desaturase)(PDS)-related; protein
id: At5g49555.1, supported by cDNA: gi_17979254
[Arabidopsis thaliana]
Length = 556
Score = 108 bits (270), Expect = 1e-22
Identities = 47/54 (87%), Positives = 54/54 (99%)
Frame = +3
Query: 3 LDSLFLMRPVKGWSNYKTPLKGLYLCGSGAHPGGGVMGAPGRNAAHLVLQEVRK 164
LDSLFLMRPVKGWSNY++PLKGLYLCGSGAHPGGGVMGAPGRNAAH+VLQ++++
Sbjct: 502 LDSLFLMRPVKGWSNYRSPLKGLYLCGSGAHPGGGVMGAPGRNAAHVVLQDLKR 555
>dbj|BAB10768.1| phytoene dehydrogenase-like [Arabidopsis thaliana]
Length = 647
Score = 100 bits (250), Expect = 2e-20
Identities = 44/47 (93%), Positives = 47/47 (99%)
Frame = +3
Query: 3 LDSLFLMRPVKGWSNYKTPLKGLYLCGSGAHPGGGVMGAPGRNAAHL 143
LDSLFLMRPVKGWSNY++PLKGLYLCGSGAHPGGGVMGAPGRNAAH+
Sbjct: 502 LDSLFLMRPVKGWSNYRSPLKGLYLCGSGAHPGGGVMGAPGRNAAHV 548
>ref|NP_190655.2| putative clathrin coat assembly protein; protein id: At3g50860.1,
supported by cDNA: gi_17529105, supported by cDNA:
gi_20465748 [Arabidopsis thaliana]
gi|17529106|gb|AAL38763.1| putative clathrin coat
assembly protein [Arabidopsis thaliana]
gi|20465749|gb|AAM20343.1| putative clathrin coat
assembly protein [Arabidopsis thaliana]
Length = 166
Score = 83.6 bits (205), Expect = 4e-15
Identities = 39/53 (73%), Positives = 48/53 (89%)
Frame = -3
Query: 915 QIHTILDEIIFGGQVLETSSTEVLKAIEEISKLEAASNTMNLVSKSVSNWRSR 757
++H +LDEI+FGGQVLETSS EV+KA+EEISKLEAASN+++LV KSVS WR R
Sbjct: 114 KMHAVLDEIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSVSGWRGR 166
>dbj|BAC11507.1| unnamed protein product [Homo sapiens]
Length = 581
Score = 77.8 bits (190), Expect = 2e-13
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +3
Query: 3 LDSLFLMRPVKGWSNYKTPLKGLYLCGSGAHPGGGVMGAPGRNAAHLVLQEVR 161
LD L+ RPV S Y+ PL+GLYLCGSGAHPGGGVMGA GRNAAH+ ++++
Sbjct: 527 LDQLYFTRPVPLHSGYRCPLQGLYLCGSGAHPGGGVMGAAGRNAAHVAFRDLK 579
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 771,886,010
Number of Sequences: 1393205
Number of extensions: 16523022
Number of successful extensions: 38546
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 36549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38512
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 51859780984
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
