Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001457A_C01 KMC001457A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_150924.1| hypothetical protein XP_150924 [Mus musculus] 35 0.47
ref|NP_702301.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.2
ref|NP_700646.1| hypothetical protein [Plasmodium falciparum 3D7... 31 6.9
>ref|XP_150924.1| hypothetical protein XP_150924 [Mus musculus]
Length = 286
Score = 35.0 bits (79), Expect = 0.47
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 228 KNFNGQIK*DNSISPSMAAPETIMLIEIQ-SHVQAHIPTKERNRPNYLHNIKKEKNH 395
K G + D SP A +T+ + Q S V A + +E NRP + H IKKE NH
Sbjct: 79 KLLKGSAREDADKSPPERADKTMKTHKAQASVVAAQVKQEETNRPPFGHRIKKELNH 135
>ref|NP_702301.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497483|gb|AAN37025.1|AE014823_5 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 819
Score = 31.6 bits (70), Expect = 5.2
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -3
Query: 474 LLENKSLEKMCVRVECIMKISSLFSFNDSFLF*CCEGNL 358
L ENK L K+C R++ I I+ S ND +++ C E L
Sbjct: 94 LYENKLLSKICTRIDNIQDIA--ISDNDKYIYACGENRL 130
>ref|NP_700646.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495037|gb|AAN35370.1|AE014831_46 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 439
Score = 31.2 bits (69), Expect = 6.9
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +2
Query: 296 YAH*NPKSCSSTHT----NQRKKPPKLPSQH*KRKESLKLKREEIFIMHSTLTHIFSKDL 463
Y H NPK THT N K+ K + K+K LK++ ++ + ++L HI K L
Sbjct: 295 YTHMNPKMSQKTHTFVILNSSKQ--KKNEKKNKKKIHLKVQGKKKKYVPNSLFHINQKKL 352
Query: 464 FSNSQFIH 487
+ N + I+
Sbjct: 353 YQNHKKIY 360
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,168,592
Number of Sequences: 1393205
Number of extensions: 7626344
Number of successful extensions: 18750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18716
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
