Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001449A_C02 KMC001449A_c02
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189120.1| F-box protein family; protein id: At3g24760.1 [... 82 6e-15
ref|NP_175070.1| CHP-rich zinc finger protein, putative; protein... 33 2.4
gb|AAF79671.1|AC022314_12 F9C16.28 [Arabidopsis thaliana] 33 2.4
ref|NP_200389.1| CHP-rich zinc finger protein, putative; protein... 33 3.1
ref|NP_189287.1| CHP-rich zinc finger protein, putative; protein... 31 9.0
>ref|NP_189120.1| F-box protein family; protein id: At3g24760.1 [Arabidopsis
thaliana]
Length = 383
Score = 81.6 bits (200), Expect = 6e-15
Identities = 38/63 (60%), Positives = 46/63 (72%), Gaps = 1/63 (1%)
Frame = -2
Query: 556 LVYVFNEDYHKMYPACVCEIHA-ESGKCEWRRVPQLPSLMNRFHKVISFSSTVPLHSILG 380
LVYVFN+D HK +PACVCEI E+G C WRRVP LPS +N+FHKV+SF STV + +
Sbjct: 312 LVYVFNDDCHKKFPACVCEIGGGENGICSWRRVPCLPSPVNKFHKVVSFCSTVSITDVFH 371
Query: 379 QRE 371
E
Sbjct: 372 PEE 374
>ref|NP_175070.1| CHP-rich zinc finger protein, putative; protein id: At1g44050.1
[Arabidopsis thaliana]
Length = 530
Score = 33.1 bits (74), Expect = 2.4
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = -1
Query: 416 LFFNCSTA*YSGST*TSVTPLPIIISYPTRKPRQFSFLKKKGSVRRTICSRL 261
+F+ C+T S ++ P+P+++ +P P SF + S IC+++
Sbjct: 60 MFYQCTTCNLSMHPVCAMRPVPLVVDHPKSHPHPLSFFPTQASTVCHICAKI 111
>gb|AAF79671.1|AC022314_12 F9C16.28 [Arabidopsis thaliana]
Length = 734
Score = 33.1 bits (74), Expect = 2.4
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = -1
Query: 416 LFFNCSTA*YSGST*TSVTPLPIIISYPTRKPRQFSFLKKKGSVRRTICSRL 261
+F+ C+T S ++ P+P+++ +P P SF + S IC+++
Sbjct: 264 MFYQCTTCNLSMHPVCAMRPVPLVVDHPKSHPHPLSFFPTQASTVCHICAKI 315
>ref|NP_200389.1| CHP-rich zinc finger protein, putative; protein id: At5g55780.1
[Arabidopsis thaliana] gi|9758612|dbj|BAB09245.1|
contains similarity to CHP-rich zinc finger
protein-like~gene_id:MDF20.22 [Arabidopsis thaliana]
Length = 685
Score = 32.7 bits (73), Expect = 3.1
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = -1
Query: 416 LFFNCSTA*YSGST*TSVTPLPIIISYPTRKPRQFSFLKKKGSVRRTICSRL 261
++++C+T S + ++ P+P+++ +P P SF + S IC+ +
Sbjct: 200 MYYHCTTCELSMNPVCAMRPVPLVVDHPKSHPHPLSFFPTQASTVCNICAMI 251
>ref|NP_189287.1| CHP-rich zinc finger protein, putative; protein id: At3g26550.1
[Arabidopsis thaliana] gi|9293934|dbj|BAB01837.1|
CHP-rich zinc finger protein-like [Arabidopsis thaliana]
Length = 681
Score = 31.2 bits (69), Expect = 9.0
Identities = 15/69 (21%), Positives = 31/69 (44%)
Frame = -1
Query: 416 LFFNCSTA*YSGST*TSVTPLPIIISYPTRKPRQFSFLKKKGSVRRTICSRL*LTDAAAQ 237
+F++C T S ++ P+P ++ +P P +F + ++ IC + + D
Sbjct: 189 MFYHCVTCDLSMDPICAMEPIPFVVDHPKSHPHPITFFPTQATLACNICGLVKMLDPTYI 248
Query: 236 LHQGLVHIH 210
Q + IH
Sbjct: 249 CIQCVFVIH 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,293,342
Number of Sequences: 1393205
Number of extensions: 8643338
Number of successful extensions: 17751
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17748
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
