Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001447A_C01 KMC001447A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172388.1| putative protein phosphatase 2C; protein id: At... 101 6e-21
ref|NP_177008.1| putative protein phosphatase; protein id: At1g6... 94 1e-18
dbj|BAB32964.1| P0504D03.12 [Oryza sativa (japonica cultivar-gro... 92 3e-18
gb|AAK92805.1| unknown protein [Arabidopsis thaliana] 82 5e-15
ref|NP_564504.1| expressed protein; protein id: At1g47380.1 [Ara... 82 5e-15
>ref|NP_172388.1| putative protein phosphatase 2C; protein id: At1g09160.1, supported
by cDNA: gi_16930414 [Arabidopsis thaliana]
gi|25402518|pir||A86224 hypothetical protein [imported]
- Arabidopsis thaliana gi|3249105|gb|AAC24088.1|
Contains similarity to protein phosphatase 2C (ABI1)
gb|X78886 from A. thaliana. [Arabidopsis thaliana]
Length = 428
Score = 101 bits (251), Expect = 6e-21
Identities = 49/79 (62%), Positives = 58/79 (73%)
Frame = -2
Query: 537 VEELFEEXSXMLTERLGKDAPSNVNSGISRCAVCQADQIPSDGLSVNSEPIFTPVSKPLE 358
VEELFEE S +L +RLGKD SN +G+ +CAVCQ D+ PS+ LS N I + SK E
Sbjct: 342 VEELFEEGSAVLADRLGKDLLSNTETGLLKCAVCQIDESPSEDLSSNGGSIISSASKRWE 401
Query: 357 GPFLCTNCQKKKDAMEGKR 301
GPFLCT C+KKKDAMEGKR
Sbjct: 402 GPFLCTICKKKKDAMEGKR 420
>ref|NP_177008.1| putative protein phosphatase; protein id: At1g68410.1, supported by
cDNA: gi_15292894, supported by cDNA: gi_20259036
[Arabidopsis thaliana] gi|25404734|pir||A96708
hypothetical protein T2E12.9 [imported] - Arabidopsis
thaliana gi|6714350|gb|AAF26041.1|AC015986_4 putative
protein phosphatase; 14863-16856 [Arabidopsis thaliana]
gi|15292895|gb|AAK92818.1| putative protein phosphatase
[Arabidopsis thaliana] gi|20259037|gb|AAM14234.1|
putative protein phosphatase [Arabidopsis thaliana]
Length = 436
Score = 94.0 bits (232), Expect = 1e-18
Identities = 47/82 (57%), Positives = 56/82 (67%), Gaps = 3/82 (3%)
Frame = -2
Query: 537 VEELFEEXSXMLTERLGK---DAPSNVNSGISRCAVCQADQIPSDGLSVNSEPIFTPVSK 367
VEELFEE S ML ERLG S GI CA+CQ D PS+G+SV++ IF+ K
Sbjct: 348 VEELFEEGSAMLAERLGSGDCSKESTTGGGIFTCAICQLDLAPSEGISVHAGSIFSTSLK 407
Query: 366 PLEGPFLCTNCQKKKDAMEGKR 301
P +GPFLCT+C+ KKDAMEGKR
Sbjct: 408 PWQGPFLCTDCRDKKDAMEGKR 429
>dbj|BAB32964.1| P0504D03.12 [Oryza sativa (japonica cultivar-group)]
gi|14495207|dbj|BAB60926.1| OSJNBa0054L14.21 [Oryza
sativa (japonica cultivar-group)]
Length = 475
Score = 92.4 bits (228), Expect = 3e-18
Identities = 47/81 (58%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
Frame = -2
Query: 537 VEELFEEXSXMLTERLGKDAPSN-VNSGISRCAVCQADQIPSDGLSVNSEPIFTPVS-KP 364
VEELFEE S ML+ERLG D+ +S + CA+CQ D PS+G+SV++ IF+ S KP
Sbjct: 388 VEELFEEGSAMLSERLGNDSSGRRTSSSLFTCAICQVDLEPSEGISVHAGSIFSSSSSKP 447
Query: 363 LEGPFLCTNCQKKKDAMEGKR 301
EGPFLC++C+ KKDAMEGKR
Sbjct: 448 WEGPFLCSDCRDKKDAMEGKR 468
>gb|AAK92805.1| unknown protein [Arabidopsis thaliana]
Length = 428
Score = 81.6 bits (200), Expect = 5e-15
Identities = 43/89 (48%), Positives = 55/89 (61%)
Frame = -2
Query: 537 VEELFEEXSXMLTERLGKDAPSNVNSGISRCAVCQADQIPSDGLSVNSEPIFTPVSKPLE 358
VEELFEE S ML+ERL P + CAVCQ + P +G+S+++ +P +
Sbjct: 339 VEELFEEGSAMLSERLDTKYPLCNMFKLFMCAVCQVEVKPGEGVSIHAGSDNCRKLRPWD 398
Query: 357 GPFLCTNCQKKKDAMEGKRSI*NAHSDNS 271
GPFLC +CQ KKDAMEGKRS + HS S
Sbjct: 399 GPFLCASCQDKKDAMEGKRSSGDRHSSES 427
>ref|NP_564504.1| expressed protein; protein id: At1g47380.1 [Arabidopsis thaliana]
gi|25405204|pir||E96514 hypothetical protein T3F24.2
[imported] - Arabidopsis thaliana
gi|9993354|gb|AAG11427.1|AC015449_9 Unknown protein
[Arabidopsis thaliana] gi|23297634|gb|AAN12997.1|
unknown protein [Arabidopsis thaliana]
Length = 428
Score = 81.6 bits (200), Expect = 5e-15
Identities = 43/89 (48%), Positives = 55/89 (61%)
Frame = -2
Query: 537 VEELFEEXSXMLTERLGKDAPSNVNSGISRCAVCQADQIPSDGLSVNSEPIFTPVSKPLE 358
VEELFEE S ML+ERL P + CAVCQ + P +G+S+++ +P +
Sbjct: 339 VEELFEEGSAMLSERLDTKYPLCNMFKLFMCAVCQVEVKPGEGVSIHAGSDNCRKLRPWD 398
Query: 357 GPFLCTNCQKKKDAMEGKRSI*NAHSDNS 271
GPFLC +CQ KKDAMEGKRS + HS S
Sbjct: 399 GPFLCASCQDKKDAMEGKRSSGDRHSSES 427
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,411,511
Number of Sequences: 1393205
Number of extensions: 8849736
Number of successful extensions: 21434
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21423
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
