Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001442A_C01 KMC001442A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187142.1| putative mitogen activated protein kinase kinas... 38 0.091
ref|NP_199643.1| CHP-rich zinc finger protein, putative; protein... 34 1.0
ref|NP_033579.1| zinc finger protein 29 [Mus musculus] gi|321998... 33 2.9
ref|XP_061891.4| similar to RIKEN cDNA 0610012A05 [Mus musculus]... 32 5.0
>ref|NP_187142.1| putative mitogen activated protein kinase kinase; protein id:
At3g04910.1, supported by cDNA: gi_20302595 [Arabidopsis
thaliana] gi|12322854|gb|AAG51416.1|AC009465_16 putative
mitogen activated protein kinase kinase; 49861-46888
[Arabidopsis thaliana] gi|20302596|dbj|BAB91125.1|
Ser/Thr kinase [Arabidopsis thaliana]
Length = 700
Score = 37.7 bits (86), Expect = 0.091
Identities = 15/27 (55%), Positives = 23/27 (84%)
Frame = -3
Query: 543 EKEIQQELRWLRAKYLMELMELKDKQL 463
E ++QQELRWL+AK +EL +++D+QL
Sbjct: 615 ENQVQQELRWLKAKCQIELRDIQDEQL 641
>ref|NP_199643.1| CHP-rich zinc finger protein, putative; protein id: At5g48320.1
[Arabidopsis thaliana] gi|8978336|dbj|BAA98189.1|
contains similarity to CHP-rich zinc finger
protein~gene_id:K23F3.4 [Arabidopsis thaliana]
Length = 977
Score = 34.3 bits (77), Expect = 1.0
Identities = 42/156 (26%), Positives = 65/156 (40%), Gaps = 5/156 (3%)
Frame = +1
Query: 4 CNKC*KLRKRSRY--EKHMLSL-YSKATCPHAEFR*VYEYNVHNQQKNSMRASYKLHIHS 174
C KC L ++ RY +KHML+L Y + T + V E ++ +++ M Y
Sbjct: 844 CFKCATLPQKVRYKHDKHMLTLSYGEETSTMTYWCEVCEKKINPKERFYMCDEY------ 897
Query: 175 INWKGNCPV*SAGVKTLSSDHTFSMRTHHLTILGPLGVQIGVALLDLRLTTRITVPVIPK 354
C V T H+ + LGV + + L V V+P
Sbjct: 898 ------CCV-----------------TLHIECM--LGVDLYMKSGSFWLYCSSKVSVLPN 932
Query: 355 GFQMNPMILFCCFCQRKC-HKVLF-CFMLLSVSCSC 456
M+ I C FC+++C H ++F C L+S S SC
Sbjct: 933 NHHMSRPI--CSFCKKRCPHNIVFQCLGLISCSTSC 966
>ref|NP_033579.1| zinc finger protein 29 [Mus musculus]
gi|3219985|sp|Q07230|ZF29_MOUSE Zinc finger protein 29
(Zfp-29) gi|91883|pir||JH0500 zinc finger protein 29 -
mouse gi|55471|emb|CAA38920.1| Zfp-29 [Mus musculus]
gi|28422265|gb|AAH46961.1| zinc finger protein 29 [Mus
musculus]
Length = 614
Score = 32.7 bits (73), Expect = 2.9
Identities = 25/79 (31%), Positives = 32/79 (39%), Gaps = 5/79 (6%)
Frame = +3
Query: 117 CTQSTEEFNESIL*ITHPQ-HQLEGKLSCVECRCKNS*Q*PYLLHENTSPHNFGPFGCPN 293
C + F+ S ITH + H E C EC S + H+ T P+ CP
Sbjct: 280 CRDCGKSFSRSANLITHQRIHTGEKPFQCAECGKSFSRSPNLIAHQRTHTGE-KPYSCPE 338
Query: 294 WGGSFG----LETHN*NHS 338
G SFG L TH H+
Sbjct: 339 CGKSFGNRSSLNTHQGIHT 357
>ref|XP_061891.4| similar to RIKEN cDNA 0610012A05 [Mus musculus] [Homo sapiens]
Length = 437
Score = 32.0 bits (71), Expect = 5.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 465 LGLAATADRKQHKTEQDFMALPLTETAKEDHGI 367
LG DR + K QDF +LP T + +E+HG+
Sbjct: 26 LGAQVEEDRTEFKEFQDFSSLPDTRSDEEEHGV 58
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,776,639
Number of Sequences: 1393205
Number of extensions: 10069828
Number of successful extensions: 24240
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24217
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
