Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001432A_C01 KMC001432A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD25929.1|AF085279_2 hypothetical protein [Arabidopsis thali... 42 0.005
pir||F84825 hypothetical protein At2g40130 [imported] - Arabidop... 42 0.005
pir||B86207 hypothetical protein [imported] - Arabidopsis thalia... 41 0.008
ref|NP_172200.2| unknown protein; protein id: At1g07200.1, suppo... 41 0.008
ref|NP_507402.1| Predicted CDS, 7 transmembrane receptor family ... 33 2.1
>gb|AAD25929.1|AF085279_2 hypothetical protein [Arabidopsis thaliana]
Length = 798
Score = 42.0 bits (97), Expect = 0.005
Identities = 18/53 (33%), Positives = 32/53 (59%)
Frame = -2
Query: 523 LEIQGEVMEQLLAAAYLSDRDMEVENWVEQVLCGGFTEAQRRYNLNASSIVKL 365
LE+ +++E+LLAA Y SD +++ +E ++ F + RY + S +VKL
Sbjct: 725 LEVDPKIIERLLAAVYFSDSRKDIKELLENIMSPVFLRIKERYEITTSCVVKL 777
>pir||F84825 hypothetical protein At2g40130 [imported] - Arabidopsis thaliana
Length = 907
Score = 42.0 bits (97), Expect = 0.005
Identities = 18/53 (33%), Positives = 32/53 (59%)
Frame = -2
Query: 523 LEIQGEVMEQLLAAAYLSDRDMEVENWVEQVLCGGFTEAQRRYNLNASSIVKL 365
LE+ +++E+LLAA Y SD +++ +E ++ F + RY + S +VKL
Sbjct: 834 LEVDPKIIERLLAAVYFSDSRKDIKELLENIMSPVFLRIKERYEITTSCVVKL 886
>pir||B86207 hypothetical protein [imported] - Arabidopsis thaliana
gi|8954026|gb|AAF82200.1|AC067971_8 Strong similarity to
an unknown protein F23F1.11 gi|7486038 from Arabidopsis
thaliana BAC F23F1 gb|AC004680. ESTs gb|T75672,
gb|N65732 and gb|AA404793 come from this gene
Length = 979
Score = 41.2 bits (95), Expect = 0.008
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Frame = -2
Query: 532 EFNLEIQGEVMEQLLAAAY--LSDRDME----VENWVEQVLCGGFTEAQRRYNLNASSIV 371
E +LE+ EV+ Q+LAA++ LS + E V+ W++ VL F EA+++Y N V
Sbjct: 897 ETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQTVLARSFAEAKQKYGSNPMLGV 956
Query: 370 KL---ASCTAPSVHLPPRIIV 317
KL +S A V LP ++ V
Sbjct: 957 KLVASSSGLASGVELPAKVDV 977
>ref|NP_172200.2| unknown protein; protein id: At1g07200.1, supported by cDNA:
gi_20260489 [Arabidopsis thaliana]
gi|20260490|gb|AAM13143.1| unknown protein [Arabidopsis
thaliana]
Length = 422
Score = 41.2 bits (95), Expect = 0.008
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Frame = -2
Query: 532 EFNLEIQGEVMEQLLAAAY--LSDRDME----VENWVEQVLCGGFTEAQRRYNLNASSIV 371
E +LE+ EV+ Q+LAA++ LS + E V+ W++ VL F EA+++Y N V
Sbjct: 340 ETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQTVLARSFAEAKQKYGSNPMLGV 399
Query: 370 KL---ASCTAPSVHLPPRIIV 317
KL +S A V LP ++ V
Sbjct: 400 KLVASSSGLASGVELPAKVDV 420
>ref|NP_507402.1| Predicted CDS, 7 transmembrane receptor family member
[Caenorhabditis elegans] gi|7508566|pir||T25346
hypothetical protein T27C5.3 - Caenorhabditis elegans
gi|3880266|emb|CAB04864.1| Hypothetical protein T27C5.3
[Caenorhabditis elegans]
Length = 186
Score = 33.1 bits (74), Expect = 2.1
Identities = 25/114 (21%), Positives = 47/114 (40%), Gaps = 22/114 (19%)
Frame = -1
Query: 377 YCETCFMYSS-----KCAPSSKDNCRMSPYLKLSSIWMYN-------LAVAYSEAILAFN 234
YC T Y + C P+++D+C+ Y W++ L +++ + FN
Sbjct: 25 YCTTLCKYQAYDFTRNCGPANRDDCK---YSWSQEFWLFAFSTTPVCLTISWYADFVKFN 81
Query: 233 PMVLLGFFV*VVV----------VYNMLSAASAVRDYPCIFKSKCCLRLYVAAC 102
+V+L + VV V+N S ++ + F + CL+ +V C
Sbjct: 82 AIVILIAMIDVVTVSKVRTYKAKVFNGSSQSAKKTHFEMSFLKQACLQAFVFTC 135
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,386,157
Number of Sequences: 1393205
Number of extensions: 9168129
Number of successful extensions: 29504
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 28479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29466
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
