Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001429A_C01 KMC001429A_c01
(738 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P49215|RS17_LYCES 40S ribosomal protein S17 gi|5758304|gb|AAD... 224 1e-57
ref|NP_196100.1| 40S ribosomal protein S17 -like; protein id: At... 223 3e-57
gb|AAM65414.1| 40S ribosomal protein S17-like [Arabidopsis thali... 220 2e-56
ref|NP_178520.1| 40S ribosomal protein S17; protein id: At2g0439... 220 2e-56
pir||B84466 40S ribosomal protein S17 [imported] - Arabidopsis t... 219 4e-56
>sp|P49215|RS17_LYCES 40S ribosomal protein S17 gi|5758304|gb|AAD50774.1|AF161704_1 40S
ribosomal protein S17 [Lycopersicon esculentum]
Length = 144
Score = 224 bits (571), Expect = 1e-57
Identities = 119/146 (81%), Positives = 131/146 (89%), Gaps = 3/146 (2%)
Frame = -3
Query: 712 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKR 533
MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVA+IPSKRLRNKIAGFSTHLMKR
Sbjct: 1 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 532 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDHIAVDKETLEMLAALGMAEIPGVVQ- 356
IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I VDKETL+ML+ALGM+++PGVV+
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120
Query: 355 -VDPVPVQQI-AYGRGAGAGAPGRRY 284
+P V + +YGRG G GR+Y
Sbjct: 121 AAEPQAVAALPSYGRGGGGF--GRKY 144
>ref|NP_196100.1| 40S ribosomal protein S17 -like; protein id: At5g04800.1, supported
by cDNA: 39018., supported by cDNA: gi_13605723
[Arabidopsis thaliana] gi|20139799|sp|Q9LZ17|R17D_ARATH
40S ribosomal protein S17-4 gi|11276733|pir||T48476 40S
ribosomal protein S17-like - Arabidopsis thaliana
gi|7413542|emb|CAB86022.1| 40S ribosomal protein
S17-like [Arabidopsis thaliana]
gi|9758455|dbj|BAB08984.1| 40S ribosomal protein S17
[Arabidopsis thaliana]
gi|13605724|gb|AAK32855.1|AF361843_1 AT5g04800/MUK11_12
[Arabidopsis thaliana] gi|23507769|gb|AAN38688.1|
At5g04800/MUK11_12 [Arabidopsis thaliana]
Length = 141
Score = 223 bits (567), Expect = 3e-57
Identities = 117/143 (81%), Positives = 125/143 (86%)
Frame = -3
Query: 712 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKR 533
MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVA+IPSKRLRNKIAGFSTHLMKR
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 532 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDHIAVDKETLEMLAALGMAEIPGVVQV 353
IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I VDKETLEMLA+LGM++ PG+ V
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120
Query: 352 DPVPVQQIAYGRGAGAGAPGRRY 284
+ P Q +A G G RRY
Sbjct: 121 E--PQQAMAPIAAFGGGRAPRRY 141
>gb|AAM65414.1| 40S ribosomal protein S17-like [Arabidopsis thaliana]
Length = 141
Score = 220 bits (560), Expect = 2e-56
Identities = 116/143 (81%), Positives = 124/143 (86%)
Frame = -3
Query: 712 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKR 533
MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVA+IPSKRLRNKIAGFSTHLMKR
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 532 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDHIAVDKETLEMLAALGMAEIPGVVQV 353
IQKGPVRGISLKLQEEERERRMDFVP ESAIKTD I VDKETLEMLA+LGM++ PG+ V
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPGESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120
Query: 352 DPVPVQQIAYGRGAGAGAPGRRY 284
+ P Q +A G G RRY
Sbjct: 121 E--PQQAMAPIAAFGGGRAPRRY 141
>ref|NP_178520.1| 40S ribosomal protein S17; protein id: At2g04390.1, supported by
cDNA: gi_16930428 [Arabidopsis thaliana]
gi|19884102|sp|P49205|R17A_ARATH 40S ribosomal protein
S17-1 gi|25295116|pir||A84457 40S ribosomal protein S17
[imported] - Arabidopsis thaliana
gi|4587611|gb|AAD25839.1| 40S ribosomal protein S17
[Arabidopsis thaliana]
gi|16930429|gb|AAL31900.1|AF419568_1 At2g04390/T1O3.20
[Arabidopsis thaliana] gi|19310511|gb|AAL84989.1|
At2g04390/T1O3.20 [Arabidopsis thaliana]
gi|21595522|gb|AAM66109.1| 40S ribosomal protein S17
[Arabidopsis thaliana]
Length = 141
Score = 220 bits (560), Expect = 2e-56
Identities = 117/143 (81%), Positives = 124/143 (85%)
Frame = -3
Query: 712 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKR 533
MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVA+IPSKRLRNKIAGFSTHLMKR
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 532 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDHIAVDKETLEMLAALGMAEIPGVVQV 353
IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I VDKETLEMLA+LGM++ G+ V
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120
Query: 352 DPVPVQQIAYGRGAGAGAPGRRY 284
D P Q +A G G RRY
Sbjct: 121 D--PQQAMAPIPAFGGGRAPRRY 141
>pir||B84466 40S ribosomal protein S17 [imported] - Arabidopsis thaliana
Length = 179
Score = 219 bits (557), Expect = 4e-56
Identities = 116/143 (81%), Positives = 123/143 (85%)
Frame = -3
Query: 712 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKR 533
MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVA+IPSKRLRNKIAGFSTHLMKR
Sbjct: 40 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 99
Query: 532 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDHIAVDKETLEMLAALGMAEIPGVVQV 353
IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I VDKETLEMLA+LGM++ G+ V
Sbjct: 100 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 159
Query: 352 DPVPVQQIAYGRGAGAGAPGRRY 284
+P QQ A G RRY
Sbjct: 160 EP---QQAMAPIAAFGGRAPRRY 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 669,124,229
Number of Sequences: 1393205
Number of extensions: 15974115
Number of successful extensions: 54712
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 49791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54469
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
