Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001427A_C01 KMC001427A_c01
(639 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T17712 hypothetical protein A222R - Chlorella virus PBCV-1 33 4.2
ref|NP_048569.2| similar to Aquifex cellulose synthase, correspo... 33 4.2
gb|AAL24122.1| unknown protein [Arabidopsis thaliana] 32 5.5
ref|NP_565798.1| expressed protein; protein id: At2g35155.1, sup... 32 5.5
gb|AAM20488.1| putative protein [Arabidopsis thaliana] gi|250840... 32 9.3
>pir||T17712 hypothetical protein A222R - Chlorella virus PBCV-1
Length = 333
Score = 32.7 bits (73), Expect = 4.2
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 2/42 (4%)
Frame = +1
Query: 415 MRQTHHLSLYAALY--LSLTPTIYLNSWL*KEELECFLLFAS 534
M+ + L LY LY LS+ PT++ NSW E+ C L F S
Sbjct: 182 MQMWYSLQLYFTLYGWLSIGPTVFFNSWCSSED-TCVLTFGS 222
>ref|NP_048569.2| similar to Aquifex cellulose synthase, corresponds to GenBank
Accession Number AE000738 [Paramecium bursaria Chlorella
virus 1] gi|11612647|gb|AAC96590.2| similar to Aquifex
cellulose synthase, corresponds to GenBank Accession
Number AE000738 [Paramecium bursaria Chlorella virus 1]
Length = 432
Score = 32.7 bits (73), Expect = 4.2
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 2/42 (4%)
Frame = +1
Query: 415 MRQTHHLSLYAALY--LSLTPTIYLNSWL*KEELECFLLFAS 534
M+ + L LY LY LS+ PT++ NSW E+ C L F S
Sbjct: 182 MQMWYSLQLYFTLYGWLSIGPTVFFNSWCSSED-TCVLTFGS 222
>gb|AAL24122.1| unknown protein [Arabidopsis thaliana]
Length = 579
Score = 32.3 bits (72), Expect = 5.5
Identities = 17/39 (43%), Positives = 24/39 (60%)
Frame = -2
Query: 632 QRYPKEDLEFKSLSELRNGPDEDNFVSLHLGEPEAKRRK 516
Q PK D +L L+N +E+ +SLHLGEP+ K+ K
Sbjct: 543 QEIPKLD----NLMALKNSSEEEVNISLHLGEPKLKKPK 577
>ref|NP_565798.1| expressed protein; protein id: At2g35155.1, supported by cDNA:
gi_16604658 [Arabidopsis thaliana]
gi|20197214|gb|AAM14975.1| expressed protein
[Arabidopsis thaliana] gi|23297468|gb|AAN12976.1|
unknown protein [Arabidopsis thaliana]
Length = 579
Score = 32.3 bits (72), Expect = 5.5
Identities = 17/39 (43%), Positives = 24/39 (60%)
Frame = -2
Query: 632 QRYPKEDLEFKSLSELRNGPDEDNFVSLHLGEPEAKRRK 516
Q PK D +L L+N +E+ +SLHLGEP+ K+ K
Sbjct: 543 QEIPKLD----NLMALKNSSEEEVNISLHLGEPKLKKPK 577
>gb|AAM20488.1| putative protein [Arabidopsis thaliana] gi|25084087|gb|AAN72171.1|
putative protein [Arabidopsis thaliana]
Length = 607
Score = 31.6 bits (70), Expect = 9.3
Identities = 17/39 (43%), Positives = 24/39 (60%), Gaps = 1/39 (2%)
Frame = -2
Query: 617 EDLEFKSLSELRNGPDEDNF-VSLHLGEPEAKRRKHSNS 504
E+LE K+LS L+ D SL LGE + K+RK ++S
Sbjct: 560 ENLESKNLSSLKTSSSGDEIGFSLQLGESDTKKRKRTDS 598
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,900,792
Number of Sequences: 1393205
Number of extensions: 10098255
Number of successful extensions: 18692
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18682
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
