Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001425A_C01 KMC001425A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05200 myosin heavy chain F4I10.130 - Arabidopsis thaliana 75 6e-13
ref|NP_195046.1| myosin - like protein; protein id: At4g33200.1 ... 75 6e-13
gb|AAK98715.1|AC090483_5 Putative myosin heavy chain [Oryza sativa] 55 4e-07
gb|AAM22736.1|AC092388_20 putative myosin heavy chain [Oryza sat... 50 2e-05
gb|AAM44879.1|AC122144_2 Putative myosin heavy chain [Oryza sati... 50 2e-05
>pir||T05200 myosin heavy chain F4I10.130 - Arabidopsis thaliana
Length = 1375
Score = 74.7 bits (182), Expect = 6e-13
Identities = 35/45 (77%), Positives = 38/45 (83%)
Frame = -2
Query: 515 NSFLLDDDMSIPFSAEDIDMAIPAIDPDEIDLPAFVPEYSCAQFL 381
NSFLLDDDMSIPFSAEDID AIP +DP EI+ P FV EY+CAQ L
Sbjct: 1317 NSFLLDDDMSIPFSAEDIDKAIPVLDPSEIEPPKFVSEYTCAQSL 1361
>ref|NP_195046.1| myosin - like protein; protein id: At4g33200.1 [Arabidopsis thaliana]
gi|25295726|pir||D85390 myosin-like protein [imported] -
Arabidopsis thaliana gi|5918016|emb|CAB36794.2|
myosin-like protein [Arabidopsis thaliana]
gi|7270268|emb|CAB80037.1| myosin-like protein
[Arabidopsis thaliana]
Length = 1374
Score = 74.7 bits (182), Expect = 6e-13
Identities = 35/45 (77%), Positives = 38/45 (83%)
Frame = -2
Query: 515 NSFLLDDDMSIPFSAEDIDMAIPAIDPDEIDLPAFVPEYSCAQFL 381
NSFLLDDDMSIPFSAEDID AIP +DP EI+ P FV EY+CAQ L
Sbjct: 1316 NSFLLDDDMSIPFSAEDIDKAIPVLDPSEIEPPKFVSEYTCAQSL 1360
>gb|AAK98715.1|AC090483_5 Putative myosin heavy chain [Oryza sativa]
Length = 1601
Score = 55.5 bits (132), Expect = 4e-07
Identities = 26/45 (57%), Positives = 33/45 (72%)
Frame = -2
Query: 515 NSFLLDDDMSIPFSAEDIDMAIPAIDPDEIDLPAFVPEYSCAQFL 381
NSFLLDDD+ IPFS ED+ +AIPAID +I+LP + Y+ Q L
Sbjct: 1548 NSFLLDDDLCIPFSTEDLSIAIPAIDYVDIELPESLHHYASVQLL 1592
>gb|AAM22736.1|AC092388_20 putative myosin heavy chain [Oryza sativa (japonica cultivar-group)]
Length = 1506
Score = 49.7 bits (117), Expect = 2e-05
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = -2
Query: 515 NSFLLDDDMSIPFSAEDIDMAIPAIDPDEIDLPAFVPEYSCAQFL 381
NSFLLDDD+SIPF+ E+I +P ID I++P+ + AQFL
Sbjct: 1451 NSFLLDDDLSIPFTTEEIAEEVPDIDMSNIEMPSSLRHVHSAQFL 1495
>gb|AAM44879.1|AC122144_2 Putative myosin heavy chain [Oryza sativa (japonica cultivar-group)]
Length = 1339
Score = 49.7 bits (117), Expect = 2e-05
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = -2
Query: 515 NSFLLDDDMSIPFSAEDIDMAIPAIDPDEIDLPAFVPEYSCAQFL 381
NSFLLDDD+SIPF+ E+I +P ID I++P+ + AQFL
Sbjct: 1284 NSFLLDDDLSIPFTTEEIAEEVPDIDMSNIEMPSSLRHVHSAQFL 1328
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,550,658
Number of Sequences: 1393205
Number of extensions: 8318276
Number of successful extensions: 15182
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 14843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15176
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
