Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001423A_C02 KMC001423A_c02
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11002.1| gene_id:K21L19.10~unknown protein [Arabidopsis t... 142 3e-33
ref|NP_200618.1| putative protein; protein id: At5g58100.1 [Arab... 123 2e-27
gb|AAD24184.1|AF131950_4 putative regulatory protein E2 [Human p... 32 6.4
gb|EAA12383.1| agCP11553 [Anopheles gambiae str. PEST] 32 8.4
>dbj|BAB11002.1| gene_id:K21L19.10~unknown protein [Arabidopsis thaliana]
Length = 932
Score = 142 bits (358), Expect = 3e-33
Identities = 67/103 (65%), Positives = 82/103 (79%)
Frame = -3
Query: 603 FQSQEHELVNEYNYVVSLWRRVSTVTGELRYVDALRLLNTLEDASKRFTEQVNTTVSLLH 424
FQS+E EL+N+Y YVVSLWRR+S V GE RY DA+R L+TLE+A+ F +VN TV +LH
Sbjct: 830 FQSRERELMNKYKYVVSLWRRLSNVAGETRYGDAMRFLHTLEEATSSFVREVNATVGVLH 889
Query: 423 PINCTRDRKIHVVFDMTTIPAFFVVLGCLYMVLRPRRPKPKIN 295
PI+CT++RK+ V DMTTIPAF +VL LY VLRPR PKPKIN
Sbjct: 890 PIHCTKERKVKVEVDMTTIPAFIIVLILLYAVLRPRAPKPKIN 932
>ref|NP_200618.1| putative protein; protein id: At5g58100.1 [Arabidopsis thaliana]
Length = 945
Score = 123 bits (308), Expect = 2e-27
Identities = 61/103 (59%), Positives = 76/103 (73%)
Frame = -3
Query: 603 FQSQEHELVNEYNYVVSLWRRVSTVTGELRYVDALRLLNTLEDASKRFTEQVNTTVSLLH 424
FQS+E EL+N+Y YV+S V GE RY DA+R L+TLE+A+ F +VN TV +LH
Sbjct: 849 FQSRERELMNKYKYVLS------NVAGETRYGDAMRFLHTLEEATSSFVREVNATVGVLH 902
Query: 423 PINCTRDRKIHVVFDMTTIPAFFVVLGCLYMVLRPRRPKPKIN 295
PI+CT++RK+ V DMTTIPAF +VL LY VLRPR PKPKIN
Sbjct: 903 PIHCTKERKVKVEVDMTTIPAFIIVLILLYAVLRPRAPKPKIN 945
>gb|AAD24184.1|AF131950_4 putative regulatory protein E2 [Human papillomavirus candHPV85]
Length = 377
Score = 32.0 bits (71), Expect = 6.4
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 322 PQYHIKAPKNNKKC-RYSCHIKHYVYFSISCAVNWM 426
P H+K KN KC RY H +Y ISC +W+
Sbjct: 299 PIVHLKGDKNRLKCLRYRLQKFHNLYTQISCTWHWI 334
>gb|EAA12383.1| agCP11553 [Anopheles gambiae str. PEST]
Length = 534
Score = 31.6 bits (70), Expect = 8.4
Identities = 22/85 (25%), Positives = 34/85 (39%), Gaps = 6/85 (7%)
Frame = -3
Query: 378 MTTIPAFFVVLGCLYMVLRPRRPKPKIN*GFNIL**ILIEECC------KEFLCWQVQAF 217
+ I +F + LY L+P P PK+ G + + L K ++ W V
Sbjct: 245 LAVISSFVIFCAMLYKPLQPPPPPPKVKPGRSAVNTFLRSFINFDNWKKKRYIIWAVSIP 304
Query: 216 VERIYYFMIYVHSFVVELEGFAGNG 142
+ YF+ YVH + F G G
Sbjct: 305 IALFGYFVPYVHMGKFVQDNFPGKG 329
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,515,618
Number of Sequences: 1393205
Number of extensions: 10493190
Number of successful extensions: 22231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22227
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
