Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001421A_C01 KMC001421A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL06934.1| At2g44770/F16B22.26 [Arabidopsis thaliana] gi|179... 147 1e-34
ref|NP_566027.1| expressed protein; protein id: At2g44770.1, sup... 147 1e-34
ref|NP_567097.1| putative protein; protein id: At3g60260.1, supp... 142 4e-33
emb|CAC39036.1| putative protein [Oryza sativa] 139 3e-32
pir||T01604 hypothetical protein At2g44770 [imported] - Arabidop... 118 5e-26
>gb|AAL06934.1| At2g44770/F16B22.26 [Arabidopsis thaliana]
gi|17981659|gb|AAL51113.1|AF458341_1 At2g44770/F16B22.26
[Arabidopsis thaliana]
Length = 266
Score = 147 bits (370), Expect = 1e-34
Identities = 71/86 (82%), Positives = 80/86 (92%)
Frame = -1
Query: 576 LDLESVKPHTLVGATFVKLLAENESAFDLLYCIAFKLMDHQWLSMRASYMDFNTVMKSTR 397
LDLE+VKP T+VGATF+K L+ENESAFDLLYCIAFKLMD QWLSMRASYM+FNTVMKSTR
Sbjct: 181 LDLEAVKPRTIVGATFLKFLSENESAFDLLYCIAFKLMDQQWLSMRASYMEFNTVMKSTR 240
Query: 396 RQLEKELLLEDITQLEDLPSYKLLSR 319
RQLE+EL+LEDI LEDLPSY LL++
Sbjct: 241 RQLERELMLEDIMHLEDLPSYALLNQ 266
>ref|NP_566027.1| expressed protein; protein id: At2g44770.1, supported by cDNA:
36996., supported by cDNA: gi_15810013, supported by
cDNA: gi_17981658 [Arabidopsis thaliana]
gi|20197031|gb|AAC27479.2| expressed protein
[Arabidopsis thaliana] gi|21593197|gb|AAM65146.1|
unknown [Arabidopsis thaliana]
Length = 266
Score = 147 bits (370), Expect = 1e-34
Identities = 71/86 (82%), Positives = 80/86 (92%)
Frame = -1
Query: 576 LDLESVKPHTLVGATFVKLLAENESAFDLLYCIAFKLMDHQWLSMRASYMDFNTVMKSTR 397
LDLE+VKP T+VGATF+K L+ENESAFDLLYCIAFKLMD QWLSMRASYM+FNTVMKSTR
Sbjct: 181 LDLEAVKPRTIVGATFLKFLSENESAFDLLYCIAFKLMDQQWLSMRASYMEFNTVMKSTR 240
Query: 396 RQLEKELLLEDITQLEDLPSYKLLSR 319
RQLE+EL+LEDI LEDLPSY LL++
Sbjct: 241 RQLERELMLEDIMHLEDLPSYALLNQ 266
>ref|NP_567097.1| putative protein; protein id: At3g60260.1, supported by cDNA:
104796., supported by cDNA: gi_17473881, supported by
cDNA: gi_20148670 [Arabidopsis thaliana]
gi|17473882|gb|AAL38361.1| putative protein [Arabidopsis
thaliana] gi|20148671|gb|AAM10226.1| putative protein
[Arabidopsis thaliana] gi|21536589|gb|AAM60921.1|
unknown [Arabidopsis thaliana]
Length = 266
Score = 142 bits (357), Expect = 4e-33
Identities = 67/86 (77%), Positives = 79/86 (90%)
Frame = -1
Query: 576 LDLESVKPHTLVGATFVKLLAENESAFDLLYCIAFKLMDHQWLSMRASYMDFNTVMKSTR 397
LDLE+VKP ++VG TF++ L+ NESAFDLLYCIAFKLMD QWLSMRASYM+FNTVMKSTR
Sbjct: 181 LDLEAVKPRSIVGETFLRFLSVNESAFDLLYCIAFKLMDQQWLSMRASYMEFNTVMKSTR 240
Query: 396 RQLEKELLLEDITQLEDLPSYKLLSR 319
RQLE+E+++EDIT LEDLPSY LLS+
Sbjct: 241 RQLEREIMIEDITSLEDLPSYSLLSQ 266
>emb|CAC39036.1| putative protein [Oryza sativa]
Length = 269
Score = 139 bits (350), Expect = 3e-32
Identities = 64/86 (74%), Positives = 77/86 (89%)
Frame = -1
Query: 576 LDLESVKPHTLVGATFVKLLAENESAFDLLYCIAFKLMDHQWLSMRASYMDFNTVMKSTR 397
LDL+SVKP + +GA F+KLL+EN+ AFD+LYCI FKLMD QWL M A+YMDFNTVMKSTR
Sbjct: 184 LDLQSVKPRSFIGAVFLKLLSENDQAFDILYCITFKLMDQQWLDMHATYMDFNTVMKSTR 243
Query: 396 RQLEKELLLEDITQLEDLPSYKLLSR 319
RQLE+ELLLEDI ++ED+PSYKLL+R
Sbjct: 244 RQLERELLLEDIQRIEDMPSYKLLAR 269
>pir||T01604 hypothetical protein At2g44770 [imported] - Arabidopsis thaliana
Length = 250
Score = 118 bits (296), Expect = 5e-26
Identities = 58/68 (85%), Positives = 63/68 (92%)
Frame = -1
Query: 522 LLAENESAFDLLYCIAFKLMDHQWLSMRASYMDFNTVMKSTRRQLEKELLLEDITQLEDL 343
L AENESAFDLLYCIAFKLMD QWLSMRASYM+FNTVMKSTRRQLE+EL+LEDI LEDL
Sbjct: 183 LEAENESAFDLLYCIAFKLMDQQWLSMRASYMEFNTVMKSTRRQLERELMLEDIMHLEDL 242
Query: 342 PSYKLLSR 319
PSY LL++
Sbjct: 243 PSYALLNQ 250
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,503,390
Number of Sequences: 1393205
Number of extensions: 8192548
Number of successful extensions: 17908
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 17102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17890
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
