Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001408A_C01 KMC001408A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196799.1| putative protein; protein id: At5g12950.1 [Arab... 120 1e-26
ref|NP_196800.1| putative protein; protein id: At5g12960.1 [Arab... 120 2e-26
gb|AAO42255.1| unknown protein [Arabidopsis thaliana] 120 2e-26
gb|AAN64151.1| Hypothetical protein [Oryza sativa (japonica cult... 48 1e-04
gb|EAA29844.1| hypothetical protein [Neurospora crassa] 42 0.007
>ref|NP_196799.1| putative protein; protein id: At5g12950.1 [Arabidopsis thaliana]
gi|11288378|pir||T49909 hypothetical protein T24H18.120 -
Arabidopsis thaliana gi|7630051|emb|CAB88259.1| putative
protein [Arabidopsis thaliana]
gi|26451123|dbj|BAC42665.1| unknown protein [Arabidopsis
thaliana]
Length = 861
Score = 120 bits (301), Expect = 1e-26
Identities = 67/141 (47%), Positives = 91/141 (64%), Gaps = 9/141 (6%)
Frame = -3
Query: 619 IEKSVMLEPIDLPGMNVVHQGANQPLIISNGGPS----SVFLVVPGLDGRNGTISLESQS 452
I + VMLEP D PGM +V Q + L + PS S F +V GLDG+ G++SL +S
Sbjct: 722 IGRLVMLEPFDFPGM-IVKQATDSSLTVQASSPSDKGASSFRLVSGLDGKLGSVSLRLES 780
Query: 451 NKGCYVHSG--LSSGSEVKLSCISGSEAT---FKQATSFVVWKGLREYNPISFVAQGTSR 287
KGC+V+S L G++++L C GS+AT FK+A SF + G+ +YNP+SFV GT R
Sbjct: 781 KKGCFVYSDQTLKQGTKLRLEC--GSDATDEKFKEAASFSLKTGMHQYNPMSFVMSGTQR 838
Query: 286 NFLLEPLLSFRDERYTVYFNI 224
NF+L PL S RDE Y VYF++
Sbjct: 839 NFVLSPLFSLRDETYNVYFSV 859
>ref|NP_196800.1| putative protein; protein id: At5g12960.1 [Arabidopsis thaliana]
gi|11288380|pir||T49910 hypothetical protein T24H18.130 -
Arabidopsis thaliana gi|7630052|emb|CAB88260.1| putative
protein [Arabidopsis thaliana]
Length = 860
Score = 120 bits (300), Expect = 2e-26
Identities = 67/137 (48%), Positives = 88/137 (63%), Gaps = 9/137 (6%)
Frame = -3
Query: 607 VMLEPIDLPGMNVVHQGANQPLIISNGGPS----SVFLVVPGLDGRNGTISLESQSNKGC 440
VMLEP D PGM +V Q + L + PS S F +V GLDG+ G++SL +S KGC
Sbjct: 725 VMLEPFDFPGM-IVKQATDSSLTVQASSPSDKGSSSFRLVSGLDGKPGSVSLSLESKKGC 783
Query: 439 YVHSG--LSSGSEVKLSCISGSEAT---FKQATSFVVWKGLREYNPISFVAQGTSRNFLL 275
+V+S L G++++L C GS AT FKQA SF + G+ +YNP+SFV GT RNF+L
Sbjct: 784 FVYSDQTLKQGTKLRLEC--GSAATDEKFKQAASFSLKTGMNQYNPMSFVMSGTQRNFVL 841
Query: 274 EPLLSFRDERYTVYFNI 224
PL S RDE Y VYF++
Sbjct: 842 SPLFSLRDETYNVYFSV 858
>gb|AAO42255.1| unknown protein [Arabidopsis thaliana]
Length = 865
Score = 120 bits (300), Expect = 2e-26
Identities = 67/137 (48%), Positives = 88/137 (63%), Gaps = 9/137 (6%)
Frame = -3
Query: 607 VMLEPIDLPGMNVVHQGANQPLIISNGGPS----SVFLVVPGLDGRNGTISLESQSNKGC 440
VMLEP D PGM +V Q + L + PS S F +V GLDG+ G++SL +S KGC
Sbjct: 730 VMLEPFDFPGM-IVKQATDSSLTVQASSPSDKGSSSFRLVSGLDGKPGSVSLSLESKKGC 788
Query: 439 YVHSG--LSSGSEVKLSCISGSEAT---FKQATSFVVWKGLREYNPISFVAQGTSRNFLL 275
+V+S L G++++L C GS AT FKQA SF + G+ +YNP+SFV GT RNF+L
Sbjct: 789 FVYSDQTLKQGTKLRLEC--GSAATDEKFKQAASFSLKTGMNQYNPMSFVMSGTQRNFVL 846
Query: 274 EPLLSFRDERYTVYFNI 224
PL S RDE Y VYF++
Sbjct: 847 SPLFSLRDETYNVYFSV 863
>gb|AAN64151.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 109
Score = 47.8 bits (112), Expect = 1e-04
Identities = 23/48 (47%), Positives = 35/48 (72%)
Frame = -3
Query: 532 NGGPSSVFLVVPGLDGRNGTISLESQSNKGCYVHSGLSSGSEVKLSCI 389
NGG +F VVPGLDG+ G++SLE S GC++ +G +G++V+LS +
Sbjct: 45 NGGGGGMFNVVPGLDGKPGSVSLELGSKPGCFLVAG--AGAKVQLSIL 90
>gb|EAA29844.1| hypothetical protein [Neurospora crassa]
Length = 488
Score = 42.0 bits (97), Expect = 0.007
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = -3
Query: 508 LVVPGLDGRNGTISLESQSNKGCYVHSGLSSGSEVKLSCISG-SEATFKQATSFVVWKGL 332
+V PGL G N T+SLES S G Y+ SG++V+ SG S A+FK S++ +GL
Sbjct: 385 VVTPGLAGGN-TVSLESASRPGMYLR---RSGTQVRFDAGSGSSSASFKSEASWMRKEGL 440
Query: 331 RE-YNPISFVAQGTSRNFL 278
+ +SF A G + +L
Sbjct: 441 ADAAKGVSFEAAGATGQYL 459
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,722,494
Number of Sequences: 1393205
Number of extensions: 11447759
Number of successful extensions: 28073
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 27250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28056
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
