Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001406A_C01 KMC001406A_c01
(659 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563981.1| expressed protein; protein id: At1g15750.1 [Ara... 64 1e-09
pir||G86291 F7H2.9 protein - Arabidopsis thaliana gi|8927654|gb|... 64 1e-09
gb|AAN62336.1|AF506028_3 CTV.2 [Poncirus trifoliata] 64 2e-09
ref|NP_178164.1| unknown protein; protein id: At1g80490.1 [Arabi... 63 4e-09
ref|NP_188209.2| putative WD-repeat protein; protein id: At3g158... 57 3e-07
>ref|NP_563981.1| expressed protein; protein id: At1g15750.1 [Arabidopsis thaliana]
gi|15028127|gb|AAK76687.1| unknown protein [Arabidopsis
thaliana] gi|23296857|gb|AAN13188.1| unknown protein
[Arabidopsis thaliana]
Length = 1131
Score = 64.3 bits (155), Expect = 1e-09
Identities = 31/48 (64%), Positives = 37/48 (76%), Gaps = 4/48 (8%)
Frame = -3
Query: 657 LTDGGVHILEPLESEGRWGSPPPTENGA---GPSTPS-GATGSEQPQR 526
L+DGGVHI EPLESEG+WG PP ENG+ P+ PS GA+ S+QPQR
Sbjct: 1084 LSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQPQR 1131
>pir||G86291 F7H2.9 protein - Arabidopsis thaliana
gi|8927654|gb|AAF82145.1|AC034256_9 Strong similarity to
an unknown protein T21F11.18 gi|6730738 from Arabidopsis
thaliana BAC T21F11 gb|AC018849 and contains multiple WD
PF|00400 domains. ESTs gb|Z34157, gb|AA006273,
gb|AA605431, gb|W43588, gb|W43605, gb|Z34559, gb|R90037,
gb|AI994125 come from this gene
Length = 1153
Score = 64.3 bits (155), Expect = 1e-09
Identities = 31/48 (64%), Positives = 37/48 (76%), Gaps = 4/48 (8%)
Frame = -3
Query: 657 LTDGGVHILEPLESEGRWGSPPPTENGA---GPSTPS-GATGSEQPQR 526
L+DGGVHI EPLESEG+WG PP ENG+ P+ PS GA+ S+QPQR
Sbjct: 1106 LSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQPQR 1153
>gb|AAN62336.1|AF506028_3 CTV.2 [Poncirus trifoliata]
Length = 1127
Score = 63.5 bits (153), Expect = 2e-09
Identities = 28/48 (58%), Positives = 36/48 (74%), Gaps = 4/48 (8%)
Frame = -3
Query: 657 LTDGGVHILEPLESEGRWGSPPPTENGAGPSTPS----GATGSEQPQR 526
L+DGGVH+ EPLESEG+WG PPP +NG+ S P+ G +GS+Q QR
Sbjct: 1080 LSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1127
>ref|NP_178164.1| unknown protein; protein id: At1g80490.1 [Arabidopsis thaliana]
gi|25406669|pir||G96836 unknown protein T21F11.18
[imported] - Arabidopsis thaliana
gi|6730738|gb|AAF27128.1|AC018849_16 unknown protein;
52184-57536 [Arabidopsis thaliana]
Length = 1073
Score = 62.8 bits (151), Expect = 4e-09
Identities = 32/48 (66%), Positives = 37/48 (76%), Gaps = 4/48 (8%)
Frame = -3
Query: 657 LTDGGVHILEPLESEGRWGSPPPTENG---AGPSTPS-GATGSEQPQR 526
L+DGGVHI EPLESEG+WG PP ENG A +TPS GA+ S+QPQR
Sbjct: 1026 LSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1073
>ref|NP_188209.2| putative WD-repeat protein; protein id: At3g15880.1, supported by
cDNA: gi_14532677 [Arabidopsis thaliana]
Length = 1135
Score = 56.6 bits (135), Expect = 3e-07
Identities = 24/43 (55%), Positives = 29/43 (66%)
Frame = -3
Query: 657 LTDGGVHILEPLESEGRWGSPPPTENGAGPSTPSGATGSEQPQ 529
LTDGGVH++EP EG+WG P ENGAGPS S +QP+
Sbjct: 1093 LTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSAPGSDQQPR 1135
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,094,874
Number of Sequences: 1393205
Number of extensions: 14114072
Number of successful extensions: 37480
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 33435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37334
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
