Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001398A_C01 KMC001398A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC20868.1| hypothetical protein~predicted by GeneMark.hmm e... 32 5.9
gb|ZP_00011933.1| hypothetical protein [Rhodopseudomonas palustris] 32 5.9
>dbj|BAC20868.1| hypothetical protein~predicted by GeneMark.hmm etc. [Oryza sativa
(japonica cultivar-group)]
Length = 251
Score = 32.0 bits (71), Expect = 5.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 297 VKFCTE*FIYWLIGCRLYCICGLDMPGSRMLWGSSHRCF 181
V+ TE F + CRL C+ G S L+G S CF
Sbjct: 80 VEITTEQFFVGITACRLNCLSGSSCVASMALYGGSSLCF 118
>gb|ZP_00011933.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 597
Score = 32.0 bits (71), Expect = 5.9
Identities = 23/61 (37%), Positives = 32/61 (51%), Gaps = 1/61 (1%)
Frame = +3
Query: 387 FHWHQHKDDFTSWGNKLIVDQL-EFNRNPITHLVAETGSKQTSLGLSKGAFLHSKRLTLA 563
++W + +D L VD L FN + I+HLV Q+ G+S+GAF H L LA
Sbjct: 490 YYWMERPEDLRD----LFVDCLFVFNLSEISHLV------QSFYGISEGAFWHRVSLRLA 539
Query: 564 A 566
A
Sbjct: 540 A 540
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,374,279
Number of Sequences: 1393205
Number of extensions: 11494243
Number of successful extensions: 24255
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24249
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
