Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001392A_C01 KMC001392A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180618.1| unknown protein; protein id: At2g30600.1 [Arabi... 105 3e-22
gb|AAM62449.1| unknown [Arabidopsis thaliana] 105 3e-22
dbj|BAC55648.1| OJ1081_B12.31 [Oryza sativa (japonica cultivar-g... 49 5e-05
dbj|BAC55644.1| OJ1081_B12.27 [Oryza sativa (japonica cultivar-g... 45 7e-04
ref|XP_149560.2| similar to actinfilin [Rattus norvegicus] [Mus ... 44 0.002
>ref|NP_180618.1| unknown protein; protein id: At2g30600.1 [Arabidopsis thaliana]
gi|25408092|pir||D84710 hypothetical protein At2g30600
[imported] - Arabidopsis thaliana
gi|1946359|gb|AAB63077.1| unknown protein [Arabidopsis
thaliana]
Length = 586
Score = 105 bits (263), Expect = 3e-22
Identities = 53/78 (67%), Positives = 63/78 (79%), Gaps = 1/78 (1%)
Frame = -2
Query: 597 KMFTNGMSESMSSDVTLRDVPPEAFKAMLDFLYDGQLN-EKFIDSGSLLLQLLLLADQFG 421
KMFTNGMSES SS + L DV PEAFKAM++F+Y G+LN E ++ G+ L+ LL LAD+FG
Sbjct: 380 KMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNMEDTVNFGTELIHLLFLADRFG 439
Query: 420 VTFLHQECCKMLLECLSE 367
V LHQECCKMLLECLSE
Sbjct: 440 VVPLHQECCKMLLECLSE 457
>gb|AAM62449.1| unknown [Arabidopsis thaliana]
Length = 809
Score = 105 bits (263), Expect = 3e-22
Identities = 53/78 (67%), Positives = 63/78 (79%), Gaps = 1/78 (1%)
Frame = -2
Query: 597 KMFTNGMSESMSSDVTLRDVPPEAFKAMLDFLYDGQLN-EKFIDSGSLLLQLLLLADQFG 421
KMFTNGMSES SS + L DV PEAFKAM++F+Y G+LN E ++ G+ L+ LL LAD+FG
Sbjct: 380 KMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNMEDTVNFGTELIHLLFLADRFG 439
Query: 420 VTFLHQECCKMLLECLSE 367
V LHQECCKMLLECLSE
Sbjct: 440 VVPLHQECCKMLLECLSE 457
>dbj|BAC55648.1| OJ1081_B12.31 [Oryza sativa (japonica cultivar-group)]
Length = 140
Score = 48.9 bits (115), Expect = 5e-05
Identities = 26/70 (37%), Positives = 42/70 (59%)
Frame = -2
Query: 579 MSESMSSDVTLRDVPPEAFKAMLDFLYDGQLNEKFIDSGSLLLQLLLLADQFGVTFLHQE 400
M+E+ S +T+ DV P F+AML F+Y +L EK + LL L+ +AD++ ++ L
Sbjct: 1 MAEAKMSRITIHDVEPVTFRAMLRFIYTDELEEKDSMATDLLQNLVAVADRYDLSRLKLM 60
Query: 399 CCKMLLECLS 370
C + L E +S
Sbjct: 61 CAQKLWEKVS 70
>dbj|BAC55644.1| OJ1081_B12.27 [Oryza sativa (japonica cultivar-group)]
Length = 182
Score = 45.1 bits (105), Expect = 7e-04
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = -2
Query: 579 MSESMSSDVTLRDVPPEAFKAMLDFLYD--------GQLNEKFIDSGSLLLQLLLLADQF 424
MSES SS +TL+D+ F+A+L F+Y G+LN + G+ LL +AD++
Sbjct: 42 MSESTSSCITLKDIDAATFRALLRFIYTDDLPAADAGKLNHQGSSMGAFFQHLLAMADRY 101
Query: 423 GVTFLHQECCKMLLECLS 370
+ L C + LL ++
Sbjct: 102 ALDRLKLMCGQRLLHSMT 119
>ref|XP_149560.2| similar to actinfilin [Rattus norvegicus] [Mus musculus]
Length = 508
Score = 43.5 bits (101), Expect = 0.002
Identities = 26/74 (35%), Positives = 38/74 (51%)
Frame = -2
Query: 594 MFTNGMSESMSSDVTLRDVPPEAFKAMLDFLYDGQLNEKFIDSGSLLLQLLLLADQFGVT 415
MFTN MSES + VTL D+ P+A ++ F Y ++ + G+ + LL A +
Sbjct: 118 MFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEI---VVGEGN-VQTLLPAASLLQLN 173
Query: 414 FLHQECCKMLLECL 373
+ CCK LL L
Sbjct: 174 GVRDACCKFLLSQL 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,759,212
Number of Sequences: 1393205
Number of extensions: 9087199
Number of successful extensions: 22033
Number of sequences better than 10.0: 179
Number of HSP's better than 10.0 without gapping: 21653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22024
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
