Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001388A_C01 KMC001388A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN06846.1| Hypothetical protein [Oryza sativa (japonica cult... 40 0.013
gb|AAH44677.1| Similar to CREB binding protein (Rubinstein-Taybi... 32 3.6
ref|NP_195638.1| leucine-rich repeat transmembrane protein kinas... 32 6.1
gb|AAM20702.1| receptor protein kinase-like protein [Arabidopsis... 32 6.1
gb|AAO81340.1| TPR domain protein [Enterococcus faecalis V583] 31 8.0
>gb|AAN06846.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 447
Score = 40.4 bits (93), Expect = 0.013
Identities = 22/53 (41%), Positives = 35/53 (65%), Gaps = 2/53 (3%)
Frame = -1
Query: 508 GSIKSSNIGETDQ--GEQVESILYGYVGVADDLDQLDFNSKSWSLVKSRKEID 356
GS S + ETD GE+ ILYGY+ ++ D+D+LD +S+ + +KS++E D
Sbjct: 393 GSDNSPLLVETDNRTGEK-RRILYGYLAISSDMDELDSDSRKRASLKSKREFD 444
>gb|AAH44677.1| Similar to CREB binding protein (Rubinstein-Taybi syndrome)
[Xenopus laevis]
Length = 1047
Score = 32.3 bits (72), Expect = 3.6
Identities = 18/35 (51%), Positives = 21/35 (59%)
Frame = +1
Query: 358 QSPSCSLPNSNSYY*NLVGPSHLQLPHNHTEYSPL 462
Q+PS SLP SNS N++GP QLP SPL
Sbjct: 823 QAPSASLPISNSM--NMLGPQTSQLPRPALSQSPL 855
>ref|NP_195638.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At4g39270.1, supported by cDNA: gi_20466769
[Arabidopsis thaliana] gi|7488273|pir||T08575 protein
kinase homolog T22F8.170 - Arabidopsis thaliana
gi|4914439|emb|CAB43642.1| receptor protein kinase-like
protein [Arabidopsis thaliana]
gi|7270910|emb|CAB80590.1| receptor protein kinase-like
protein [Arabidopsis thaliana]
Length = 864
Score = 31.6 bits (70), Expect = 6.1
Identities = 23/70 (32%), Positives = 38/70 (53%)
Frame = +2
Query: 302 TILKLTALIGFNRSLFQVVNLLPALYQTPTLTIEI*LVQVICNSHITIQNTLHLLSLICL 481
+++ LT L FN S F + +PAL+ + LT+E V+ S +I T+ SL L
Sbjct: 96 SLVNLTRLASFNASRFYLPGPIPALFGSSLLTLE-----VLDLSSCSITGTIP-ESLTRL 149
Query: 482 SYVRAFDTSR 511
S+++ D S+
Sbjct: 150 SHLKVLDLSK 159
>gb|AAM20702.1| receptor protein kinase-like protein [Arabidopsis thaliana]
Length = 864
Score = 31.6 bits (70), Expect = 6.1
Identities = 23/70 (32%), Positives = 38/70 (53%)
Frame = +2
Query: 302 TILKLTALIGFNRSLFQVVNLLPALYQTPTLTIEI*LVQVICNSHITIQNTLHLLSLICL 481
+++ LT L FN S F + +PAL+ + LT+E V+ S +I T+ SL L
Sbjct: 96 SLVNLTRLASFNASRFYLPGPIPALFGSSLLTLE-----VLDLSSCSITGTIP-ESLTRL 149
Query: 482 SYVRAFDTSR 511
S+++ D S+
Sbjct: 150 SHLKVLDLSK 159
>gb|AAO81340.1| TPR domain protein [Enterococcus faecalis V583]
Length = 397
Score = 31.2 bits (69), Expect = 8.0
Identities = 23/89 (25%), Positives = 43/89 (47%), Gaps = 8/89 (8%)
Frame = -1
Query: 502 IKSSNIGE-TDQGEQVESILY-------GYVGVADDLDQLDFNSKSWSLVKSRKEIDDLE 347
+K+ +GE TD+ S LY + + +DL++ D W+L K+ E++D
Sbjct: 275 LKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEETDHPYAEWNLAKAYNELEDFA 334
Query: 346 KAPVKTDKSR*FQNGERPF*KFHAPLMQE 260
A V +++ + E F K +A ++E
Sbjct: 335 VAKVHYEQAAQELSHEPEFLKEYALFLRE 363
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,590,574
Number of Sequences: 1393205
Number of extensions: 8029763
Number of successful extensions: 15685
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15680
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
