Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001386A_C01 KMC001386A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177485.1| unknown protein; protein id: At1g73430.1 [Arabi... 101 5e-21
gb|AAM98086.1| At1g73430/T9L24_16 [Arabidopsis thaliana] 101 5e-21
ref|XP_139143.4| similar to tethering factor SEC34 [Homo sapiens... 61 8e-09
ref|NP_796355.1| component of oligomeric golgi complex 2 [Mus mu... 61 8e-09
ref|NP_113619.1| tethering factor SEC34 [Homo sapiens] gi|127449... 60 2e-08
>ref|NP_177485.1| unknown protein; protein id: At1g73430.1 [Arabidopsis thaliana]
gi|25406267|pir||H96760 unknown protein [imported] -
Arabidopsis thaliana
gi|11120801|gb|AAG30981.1|AC012396_17 unknown protein
[Arabidopsis thaliana]
Length = 745
Score = 101 bits (252), Expect = 5e-21
Identities = 49/72 (68%), Positives = 63/72 (87%)
Frame = -1
Query: 556 IQEQLPVVIEKMKLYLQNSSTRTILFKPIKTNIVEAHTQIQSLLQSEYTSEDIQIINLKS 377
IQ++L ++ KMKLYLQN STRTILFKPIKTNIVEAHTQ++SLL++EY++E+ IN+ S
Sbjct: 674 IQQELLPILAKMKLYLQNPSTRTILFKPIKTNIVEAHTQVESLLKAEYSAEEQANINMIS 733
Query: 376 VQDLQTELDNLL 341
+QDLQT+LDN L
Sbjct: 734 IQDLQTQLDNFL 745
>gb|AAM98086.1| At1g73430/T9L24_16 [Arabidopsis thaliana]
Length = 784
Score = 101 bits (252), Expect = 5e-21
Identities = 49/72 (68%), Positives = 63/72 (87%)
Frame = -1
Query: 556 IQEQLPVVIEKMKLYLQNSSTRTILFKPIKTNIVEAHTQIQSLLQSEYTSEDIQIINLKS 377
IQ++L ++ KMKLYLQN STRTILFKPIKTNIVEAHTQ++SLL++EY++E+ IN+ S
Sbjct: 713 IQQELLPILAKMKLYLQNPSTRTILFKPIKTNIVEAHTQVESLLKAEYSAEEQANINMIS 772
Query: 376 VQDLQTELDNLL 341
+QDLQT+LDN L
Sbjct: 773 IQDLQTQLDNFL 784
>ref|XP_139143.4| similar to tethering factor SEC34 [Homo sapiens] [Mus musculus]
Length = 828
Score = 61.2 bits (147), Expect = 8e-09
Identities = 33/75 (44%), Positives = 47/75 (62%)
Frame = -1
Query: 556 IQEQLPVVIEKMKLYLQNSSTRTILFKPIKTNIVEAHTQIQSLLQSEYTSEDIQIINLKS 377
I+ +LP+ + M LYL N T ILFKP++ NI + + +LL+ E++SEDIQII S
Sbjct: 757 IKTKLPLTLRSMALYLSNKDTEFILFKPVRNNIQQVFQKFHALLKEEFSSEDIQIIACPS 816
Query: 376 VQDLQTELDNLL*SV 332
++ L NLL SV
Sbjct: 817 MEQL-----NLLLSV 826
>ref|NP_796355.1| component of oligomeric golgi complex 2 [Mus musculus]
gi|23274267|gb|AAH38030.1| Similar to component of
oligomeric golgi complex 3 [Mus musculus]
Length = 820
Score = 61.2 bits (147), Expect = 8e-09
Identities = 33/75 (44%), Positives = 47/75 (62%)
Frame = -1
Query: 556 IQEQLPVVIEKMKLYLQNSSTRTILFKPIKTNIVEAHTQIQSLLQSEYTSEDIQIINLKS 377
I+ +LP+ + M LYL N T ILFKP++ NI + + +LL+ E++SEDIQII S
Sbjct: 749 IKTKLPLTLRSMALYLSNKDTEFILFKPVRNNIQQVFQKFHALLKEEFSSEDIQIIACPS 808
Query: 376 VQDLQTELDNLL*SV 332
++ L NLL SV
Sbjct: 809 MEQL-----NLLLSV 818
>ref|NP_113619.1| tethering factor SEC34 [Homo sapiens]
gi|12744921|gb|AAK06848.1|AF332595_1 tethering factor
SEC34 [Homo sapiens]
Length = 828
Score = 60.1 bits (144), Expect = 2e-08
Identities = 28/64 (43%), Positives = 41/64 (63%)
Frame = -1
Query: 556 IQEQLPVVIEKMKLYLQNSSTRTILFKPIKTNIVEAHTQIQSLLQSEYTSEDIQIINLKS 377
I+ +LPV + M LYL N T ILFKP++ NI + + +LL+ E++ EDIQII S
Sbjct: 757 IKTKLPVTLRSMSLYLSNKDTEFILFKPVRNNIQQVFQKFHALLKEEFSPEDIQIIACPS 816
Query: 376 VQDL 365
++ L
Sbjct: 817 MEQL 820
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,888,018
Number of Sequences: 1393205
Number of extensions: 9444101
Number of successful extensions: 24656
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 23822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24648
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
