Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001385A_C01 KMC001385A_c01
(648 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_296284.1| hypothetical protein [Deinococcus radiodurans] ... 32 7.3
ref|XP_227417.1| similar to hypothetical protein FLJ32785 [Homo ... 32 9.6
gb|EAA17615.1| hypothetical protein [Plasmodium yoelii yoelii] 32 9.6
>ref|NP_296284.1| hypothetical protein [Deinococcus radiodurans]
gi|7472150|pir||B75259 hypothetical protein -
Deinococcus radiodurans (strain R1)
gi|6460393|gb|AAF12107.1|AE002085_10 hypothetical
protein [Deinococcus radiodurans]
Length = 270
Score = 32.0 bits (71), Expect = 7.3
Identities = 18/43 (41%), Positives = 27/43 (61%)
Frame = -3
Query: 592 DKMGLVTDHWHSEQFMLRELLDYSSSSIFIRLSTTSHMRMISP 464
D +GLVT H H QF+LREL+ + ++ F R++ TS + P
Sbjct: 203 DTVGLVT-HGHFTQFLLRELISHGTA--FFRVANTSTTLLTLP 242
>ref|XP_227417.1| similar to hypothetical protein FLJ32785 [Homo sapiens] [Rattus
norvegicus]
Length = 653
Score = 31.6 bits (70), Expect = 9.6
Identities = 23/78 (29%), Positives = 37/78 (46%), Gaps = 1/78 (1%)
Frame = -2
Query: 422 KKKERKVPVTNSKLISFRICGAFVEKL-CLVAYKIK*FCHILTPNPTNTKLTNDNV*VSL 246
KK +R + L++ +C K C +A ++ +CH P N T D+V S+
Sbjct: 194 KKHQRCMQRIQVPLLNSLLCLPMKFKFFCNIAKVMEIWCHKRIPVEGNFGQTYDSVNQSI 253
Query: 245 EEMSCVFTCNIDVNNIKT 192
+S F+ NID+ KT
Sbjct: 254 HGLSGEFSANIDIKGSKT 271
>gb|EAA17615.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 287
Score = 31.6 bits (70), Expect = 9.6
Identities = 22/81 (27%), Positives = 39/81 (47%), Gaps = 9/81 (11%)
Frame = +3
Query: 63 KNKIKTKVVNLIIYTIKGLSTL*RNYLRHNLVHA------VML*PTASTCFYIIYIYVTS 224
K ++KT +N +IY K L + YLR + + + P F +Y Y ++
Sbjct: 161 KKRVKTNRINPVIYIKKRLVSATAKYLRMSFIKTRKILWKIRYMPIIK-AFAFLYYYGSN 219
Query: 225 KYTTHL---LKAYLNIVICQF 278
KYT + +K+ L+ IC++
Sbjct: 220 KYTVSIYKCIKSCLHNAICKY 240
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,402,115
Number of Sequences: 1393205
Number of extensions: 10898434
Number of successful extensions: 20286
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20285
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
