Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001369A_C01 KMC001369A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177159.1| hypothetical protein; protein id: At1g70010.1 [... 84 2e-20
gb|AAO26690.1|AF478377_1 gag-pol polyprotein [Vitis vinifera] 89 2e-18
gb|AAO26684.1|AF478370_1 gag-pol polyprotein [Vitis vinifera] 87 7e-18
gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana] 73 1e-17
ref|NP_174020.1| polyprotein, putative; protein id: At1g26990.1 ... 73 1e-17
>ref|NP_177159.1| hypothetical protein; protein id: At1g70010.1 [Arabidopsis thaliana]
gi|25301690|pir||G96722 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana
gi|2194136|gb|AAB61111.1| Strong similarity to Zea mays
retrotransposon Hopscotch polyprotein (gb|U12626).
[Arabidopsis thaliana]
Length = 1315
Score = 84.0 bits (206), Expect(2) = 2e-20
Identities = 39/67 (58%), Positives = 50/67 (74%)
Frame = -2
Query: 494 HIAANPVFHERTKHIEIDCHIVRERIQKGLIHLLPISSSEPLADIYTKALSPQNFHQICA 315
HIA N VFHERTKHIE DCH VRER+ KGL L I++ +AD +TK L P +FH++ +
Sbjct: 1245 HIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQIADPFTKPLYPSHFHRLIS 1304
Query: 314 KLGLINI 294
K+GL+NI
Sbjct: 1305 KMGLLNI 1311
Score = 36.6 bits (83), Expect(2) = 2e-20
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = -1
Query: 576 WLTYLLQDLKVPFEQPALVYCDNNSA 499
WLT L++L+VP +P L++CDN +A
Sbjct: 1218 WLTNFLKELQVPLSKPTLLFCDNEAA 1243
>gb|AAO26690.1|AF478377_1 gag-pol polyprotein [Vitis vinifera]
Length = 326
Score = 88.6 bits (218), Expect(2) = 2e-18
Identities = 39/71 (54%), Positives = 52/71 (72%)
Frame = -2
Query: 494 HIAANPVFHERTKHIEIDCHIVRERIQKGLIHLLPISSSEPLADIYTKALSPQNFHQICA 315
HIAANPV+HERTKHIE+DCH +RE+I++ L+ + + E L DI+TKAL+ C
Sbjct: 256 HIAANPVYHERTKHIEVDCHFIREKIEENLVSTDYVKTGEQLGDIFTKALNGTRVEYFCN 315
Query: 314 KLGLINICSPA 282
KLG+INI +PA
Sbjct: 316 KLGMINIYAPA 326
Score = 25.0 bits (53), Expect(2) = 2e-18
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 576 WLTYLLQDLKVPFEQPALVYCDNNSAKAYRSQP 478
W+ LL ++ + PA ++CDN +A + P
Sbjct: 229 WIHQLLCEVGMKCTMPAKLWCDNQAALHIAANP 261
>gb|AAO26684.1|AF478370_1 gag-pol polyprotein [Vitis vinifera]
Length = 326
Score = 87.0 bits (214), Expect(2) = 7e-18
Identities = 38/70 (54%), Positives = 51/70 (72%)
Frame = -2
Query: 494 HIAANPVFHERTKHIEIDCHIVRERIQKGLIHLLPISSSEPLADIYTKALSPQNFHQICA 315
HIAANPV+HERTKHIE+DCH +RE+I++ L+ + + E L DI+TKAL+ C
Sbjct: 256 HIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNGTRVEYFCN 315
Query: 314 KLGLINICSP 285
KLG+INI +P
Sbjct: 316 KLGMINIYAP 325
Score = 25.0 bits (53), Expect(2) = 7e-18
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 576 WLTYLLQDLKVPFEQPALVYCDNNSAKAYRSQP 478
W+ LL ++ + PA ++CDN +A + P
Sbjct: 229 WIHQLLCEVGMKCTMPAKLWCDNQAALHIAANP 261
>gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana]
Length = 1436
Score = 73.2 bits (178), Expect(2) = 1e-17
Identities = 36/67 (53%), Positives = 46/67 (67%)
Frame = -2
Query: 494 HIAANPVFHERTKHIEIDCHIVRERIQKGLIHLLPISSSEPLADIYTKALSPQNFHQICA 315
HIA N VFHERTKHIE DCH VRE I+ G++ + + + LAD TK L P+ F + +
Sbjct: 1365 HIANNSVFHERTKHIENDCHKVRECIEAGILKTIFVRTDNQLADTLTKPLYPKPFRENNS 1424
Query: 314 KLGLINI 294
KLGL+NI
Sbjct: 1425 KLGLLNI 1431
Score = 38.1 bits (87), Expect(2) = 1e-17
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = -1
Query: 576 WLTYLLQDLKVPFEQPALVYCDNNSA 499
WL Y+L K+PF PA +YCDN +A
Sbjct: 1338 WLGYILTAFKIPFTHPAYLYCDNEAA 1363
>ref|NP_174020.1| polyprotein, putative; protein id: At1g26990.1 [Arabidopsis thaliana]
Length = 1425
Score = 73.2 bits (178), Expect(2) = 1e-17
Identities = 36/67 (53%), Positives = 46/67 (67%)
Frame = -2
Query: 494 HIAANPVFHERTKHIEIDCHIVRERIQKGLIHLLPISSSEPLADIYTKALSPQNFHQICA 315
HIA N VFHERTKHIE DCH VRE I+ G++ + + + LAD TK L P+ F + +
Sbjct: 1354 HIANNSVFHERTKHIENDCHKVRECIEAGILKTIFVRTDNQLADTLTKPLYPKPFRENNS 1413
Query: 314 KLGLINI 294
KLGL+NI
Sbjct: 1414 KLGLLNI 1420
Score = 38.1 bits (87), Expect(2) = 1e-17
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = -1
Query: 576 WLTYLLQDLKVPFEQPALVYCDNNSA 499
WL Y+L K+PF PA +YCDN +A
Sbjct: 1327 WLGYILTAFKIPFTHPAYLYCDNEAA 1352
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,565,828
Number of Sequences: 1393205
Number of extensions: 9074347
Number of successful extensions: 18692
Number of sequences better than 10.0: 346
Number of HSP's better than 10.0 without gapping: 18101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18676
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
