Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001362A_C03 KMC001362A_c03
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK83865.1|AF393989_1 PufM [uncultured bacterium] 35 0.49
gb|AAK83861.1|AF393985_1 PufM [uncultured bacterium] gi|15081336... 35 0.49
gb|AAM48658.1| photosynthetic reaction center M subunit [uncultu... 35 0.49
gb|AAL02389.1| pufM [uncultured bacterium] 35 0.64
gb|EAA20724.1| hypothetical protein [Plasmodium yoelii yoelii] 33 1.9
>gb|AAK83865.1|AF393989_1 PufM [uncultured bacterium]
Length = 203
Score = 35.4 bits (80), Expect = 0.49
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = -2
Query: 295 SGFMWI*LFGWALLSLIARHIDRLGRHISWSFCASL*LFFFLGQAPTITV---HNVVVFF 125
S F+ + + W + + + LG+H+SW+F +++ LF LG + + V +
Sbjct: 73 SFFLLVSVIAWWIRTYLRAEELGLGKHVSWAFASAIWLFLVLGLIRPVMMGSWSEAVPYG 132
Query: 124 SSCFLPWSSLFLSLSFG 74
L W++LF SL++G
Sbjct: 133 VFSHLDWTNLF-SLTYG 148
>gb|AAK83861.1|AF393985_1 PufM [uncultured bacterium] gi|15081336|gb|AAK83864.1|AF393988_1
PufM [uncultured bacterium]
Length = 203
Score = 35.4 bits (80), Expect = 0.49
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = -2
Query: 295 SGFMWI*LFGWALLSLIARHIDRLGRHISWSFCASL*LFFFLGQAPTITV---HNVVVFF 125
S F+ + + W + + + LG+H+SW+F +++ LF LG + + V +
Sbjct: 73 SFFLLVSVIAWWIRTYLRAEELGLGKHVSWAFASAIWLFLVLGLIRPVMMGSWSEAVPYG 132
Query: 124 SSCFLPWSSLFLSLSFG 74
L W++LF SL++G
Sbjct: 133 VFSHLDWTNLF-SLTYG 148
>gb|AAM48658.1| photosynthetic reaction center M subunit [uncultured
proteobacterium]
Length = 307
Score = 35.4 bits (80), Expect = 0.49
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = -2
Query: 295 SGFMWI*LFGWALLSLIARHIDRLGRHISWSFCASL*LFFFLGQAPTITV---HNVVVFF 125
S F+ + + W + + + LG+H+SW+F +++ LF LG + + V +
Sbjct: 119 SFFLLVSVIAWWIRTYLRAEELGLGKHVSWAFASAIWLFLVLGLIRPVMMGSWSEAVPYG 178
Query: 124 SSCFLPWSSLFLSLSFG 74
L W++LF SL++G
Sbjct: 179 VFSHLDWTNLF-SLTYG 194
>gb|AAL02389.1| pufM [uncultured bacterium]
Length = 203
Score = 35.0 bits (79), Expect = 0.64
Identities = 14/43 (32%), Positives = 26/43 (59%)
Frame = -2
Query: 295 SGFMWI*LFGWALLSLIARHIDRLGRHISWSFCASL*LFFFLG 167
S F+ + + W L S + ++G+H++W+F A++ LF LG
Sbjct: 73 SFFLLVSVMSWWLRSYLLAQQHKMGKHVAWAFLAAIWLFLVLG 115
>gb|EAA20724.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 795
Score = 33.5 bits (75), Expect = 1.9
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 86 RKKQRAPGEK--TGRKKNNHIMHCNSRRLSKEKKKLQGGTKRPANVPAQSVNVSRN 247
+KK+ G++ T KKN++I R LSKE+K +QG K N NV RN
Sbjct: 145 KKKKHGDGDELVTCEKKNDYI-----RELSKEEKGIQGNNKNYENNRNTESNVKRN 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,484,874
Number of Sequences: 1393205
Number of extensions: 11665448
Number of successful extensions: 40138
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39651
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
