Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001359A_C01 KMC001359A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187935.1| hypothetical protein; protein id: At3g13270.1 [... 43 0.002
dbj|BAB02796.1| replication protein A1-like [Arabidopsis thaliana] 43 0.002
gb|AAN46886.1| nucleotide exchange factor RasGEF R [Dictyosteliu... 32 0.005
pir||T09127 probable erythrocyte-binding protein MAEBL - Plasmod... 41 0.012
ref|NP_174826.1| hypothetical protein; protein id: At1g35920.1 [... 40 0.026
>ref|NP_187935.1| hypothetical protein; protein id: At3g13270.1 [Arabidopsis
thaliana]
Length = 570
Score = 43.1 bits (100), Expect = 0.002
Identities = 25/100 (25%), Positives = 49/100 (49%)
Frame = -2
Query: 562 EIPPVLRNLCKQTLIFEIKLSDHNLKEGSQNYTVTRTFIPTSLIEEQSTHKSVQKDPISP 383
++P L+NL +T +F + + N+ +G + Y VT+ + L+EE+ S D ++P
Sbjct: 383 DLPDALKNLYGKTFLFLVSIEKENIWDGKEIYKVTKVLLKNGLLEEELLEDST--DVVNP 440
Query: 382 QQISSDEEEEPLVFKKKKKQEAAKPRQSASNHQEENNGQD 263
I S ++ PL+ + ++ S + + NG D
Sbjct: 441 ASIVSG-DQIPLMLEYSQETTDTVTPVSKRVYADNPNGSD 479
>dbj|BAB02796.1| replication protein A1-like [Arabidopsis thaliana]
Length = 581
Score = 43.1 bits (100), Expect = 0.002
Identities = 25/100 (25%), Positives = 49/100 (49%)
Frame = -2
Query: 562 EIPPVLRNLCKQTLIFEIKLSDHNLKEGSQNYTVTRTFIPTSLIEEQSTHKSVQKDPISP 383
++P L+NL +T +F + + N+ +G + Y VT+ + L+EE+ S D ++P
Sbjct: 394 DLPDALKNLYGKTFLFLVSIEKENIWDGKEIYKVTKVLLKNGLLEEELLEDST--DVVNP 451
Query: 382 QQISSDEEEEPLVFKKKKKQEAAKPRQSASNHQEENNGQD 263
I S ++ PL+ + ++ S + + NG D
Sbjct: 452 ASIVSG-DQIPLMLEYSQETTDTVTPVSKRVYADNPNGSD 490
>gb|AAN46886.1| nucleotide exchange factor RasGEF R [Dictyostelium discoideum]
gi|28829254|gb|AAO51796.1| similar to Dictyostelium
discoideum (Slime mold). Nucleotide exchange factor
RasGEF R
Length = 1721
Score = 31.6 bits (70), Expect(2) = 0.005
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -2
Query: 430 EEQSTHKSVQKDPISPQQISSDEEEEPLVFKKKKKQEAAKPRQSASNHQEENNGQ 266
E H+ QK+ Q+ E+E L+ K+ K+QE K ++ Q++ Q
Sbjct: 152 EVDLVHQQQQKEQEQQQKEQEQYEQEQLILKQLKEQELKKQQEQQQQQQQQQQQQ 206
Score = 29.6 bits (65), Expect(2) = 0.005
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -1
Query: 200 ENQRWQRKHDKEAEKNNQTDKIEK 129
+ Q+ Q+KH +E EKN+Q +K EK
Sbjct: 209 QQQQQQQKHQEEKEKNDQKEKEEK 232
>pir||T09127 probable erythrocyte-binding protein MAEBL - Plasmodium yoelii
gi|2947228|gb|AAC05366.1| erythrocyte binding protein
[Plasmodium yoelii yoelii]
Length = 1701
Score = 40.8 bits (94), Expect = 0.012
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = -2
Query: 370 SDEEEEPLVFKKK----KKQEAAKPRQSASNHQEENNGQDGITSIDEEQILIQTLRTPT- 206
S+ ++ L KKK KK E K ++A +EE + +EE+ ++ R P
Sbjct: 1254 SEAAKKALERKKKAEAAKKAEEKKKAEAAKKAEEEKKKAEAAKKAEEEKKRLKLQRKPER 1313
Query: 205 SKRTRDGNGSTTRKRKRITRQIK*KKK 125
K+ R G S RK+KR+ Q K KKK
Sbjct: 1314 KKKRRSGKESRRRKKKRLKLQRKQKKK 1340
>ref|NP_174826.1| hypothetical protein; protein id: At1g35920.1 [Arabidopsis
thaliana] gi|25518393|pir||B86481 hypothetical protein
F10O5.9 - Arabidopsis thaliana
gi|12322096|gb|AAG51090.1|AC027032_10 hypothetical
protein [Arabidopsis thaliana]
Length = 567
Score = 39.7 bits (91), Expect = 0.026
Identities = 24/104 (23%), Positives = 51/104 (48%)
Frame = -2
Query: 562 EIPPVLRNLCKQTLIFEIKLSDHNLKEGSQNYTVTRTFIPTSLIEEQSTHKSVQKDPISP 383
++P ++NL +T +F + + N+ +G + Y V++ + LIEEQ S + ++P
Sbjct: 381 DLPDSVKNLIGKTFLFLVCVEKDNILDGKEIYKVSKVLLKDGLIEEQLLEDSAEH--VNP 438
Query: 382 QQISSDEEEEPLVFKKKKKQEAAKPRQSASNHQEENNGQDGITS 251
I S ++ ++ ++ P S + E +G +G +S
Sbjct: 439 ASIVSGDQVLLMLENGNGSPDSTTP-SSKRVYARETSGSEGSSS 481
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,304,131
Number of Sequences: 1393205
Number of extensions: 9843753
Number of successful extensions: 48018
Number of sequences better than 10.0: 222
Number of HSP's better than 10.0 without gapping: 39167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45797
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
