Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001358A_C01 KMC001358A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200529.1| phosphatidylserine decarboxylase; protein id: A... 143 1e-33
pir||T04252 probable phosphatidylserine decarboxylase (EC 4.1.1.... 142 3e-33
ref|NP_567736.1| putative phosphatidylserine decarboxylase; prot... 142 3e-33
dbj|BAB89010.1| putative phosphatidylserine decarboxylase [Oryza... 132 4e-30
gb|EAA32380.1| hypothetical protein [Neurospora crassa] gi|28950... 91 1e-17
>ref|NP_200529.1| phosphatidylserine decarboxylase; protein id: At5g57190.1
[Arabidopsis thaliana] gi|8843821|dbj|BAA97369.1|
phosphatidylserine decarboxylase [Arabidopsis thaliana]
Length = 615
Score = 143 bits (361), Expect = 1e-33
Identities = 71/87 (81%), Positives = 79/87 (90%)
Frame = -3
Query: 598 IISTVDFGKVAFVAIGATMVGSITFTKKKGDHVKKGDEFGYFSFGGSTVICVFEKNSITI 419
IIST +FGKVAFVAIGATMVGSI F +K+G+HVKKGDE GYFSFGGSTVICVFEK++I I
Sbjct: 521 IISTAEFGKVAFVAIGATMVGSINFVRKEGEHVKKGDELGYFSFGGSTVICVFEKDAIGI 580
Query: 418 DQDLLINSTRPLETLVSVGMRLGVSTR 338
D DLL+NS R LETLVSVGM+LGVSTR
Sbjct: 581 DNDLLVNSGRSLETLVSVGMQLGVSTR 607
>pir||T04252 probable phosphatidylserine decarboxylase (EC 4.1.1.65) F20B18.80
precursor - Arabidopsis thaliana
gi|4538926|emb|CAB39662.1| putative phosphatidylserine
decarboxylase [Arabidopsis thaliana]
gi|7269448|emb|CAB79452.1| putative phosphatidylserine
decarboxylase [Arabidopsis thaliana]
Length = 628
Score = 142 bits (358), Expect = 3e-33
Identities = 71/89 (79%), Positives = 80/89 (89%)
Frame = -3
Query: 598 IISTVDFGKVAFVAIGATMVGSITFTKKKGDHVKKGDEFGYFSFGGSTVICVFEKNSITI 419
IIST +FGKVAFVAIGATMVGSI+F +++GDHVKKGDE GYFSFGGSTVICVFEK+SI I
Sbjct: 533 IISTAEFGKVAFVAIGATMVGSISFVRQEGDHVKKGDELGYFSFGGSTVICVFEKDSIKI 592
Query: 418 DQDLLINSTRPLETLVSVGMRLGVSTRKL 332
D+DLL NS R LETLV+VGM+LGVS KL
Sbjct: 593 DEDLLANSARSLETLVTVGMQLGVSFPKL 621
>ref|NP_567736.1| putative phosphatidylserine decarboxylase; protein id: At4g25970.1
[Arabidopsis thaliana]
Length = 635
Score = 142 bits (358), Expect = 3e-33
Identities = 71/89 (79%), Positives = 80/89 (89%)
Frame = -3
Query: 598 IISTVDFGKVAFVAIGATMVGSITFTKKKGDHVKKGDEFGYFSFGGSTVICVFEKNSITI 419
IIST +FGKVAFVAIGATMVGSI+F +++GDHVKKGDE GYFSFGGSTVICVFEK+SI I
Sbjct: 540 IISTAEFGKVAFVAIGATMVGSISFVRQEGDHVKKGDELGYFSFGGSTVICVFEKDSIKI 599
Query: 418 DQDLLINSTRPLETLVSVGMRLGVSTRKL 332
D+DLL NS R LETLV+VGM+LGVS KL
Sbjct: 600 DEDLLANSARSLETLVTVGMQLGVSFPKL 628
>dbj|BAB89010.1| putative phosphatidylserine decarboxylase [Oryza sativa (japonica
cultivar-group)]
Length = 642
Score = 132 bits (331), Expect = 4e-30
Identities = 69/87 (79%), Positives = 76/87 (87%)
Frame = -3
Query: 598 IISTVDFGKVAFVAIGATMVGSITFTKKKGDHVKKGDEFGYFSFGGSTVICVFEKNSITI 419
IIST +FGKVAFVAIGATMVGSI F K++GD+V KGDE GYF+FGGSTVICVFEK++I
Sbjct: 542 IISTSEFGKVAFVAIGATMVGSIEFLKEEGDYVHKGDE-GYFAFGGSTVICVFEKDAIEF 600
Query: 418 DQDLLINSTRPLETLVSVGMRLGVSTR 338
D DLL NS R LETLVSVGMRLGVSTR
Sbjct: 601 DADLLANSARSLETLVSVGMRLGVSTR 627
>gb|EAA32380.1| hypothetical protein [Neurospora crassa] gi|28950077|emb|CAD70830.1|
related to phosphatidylserine decarboxylase [Neurospora
crassa]
Length = 1062
Score = 90.9 bits (224), Expect = 1e-17
Identities = 41/77 (53%), Positives = 55/77 (71%)
Frame = -3
Query: 580 FGKVAFVAIGATMVGSITFTKKKGDHVKKGDEFGYFSFGGSTVICVFEKNSITIDQDLLI 401
FG+V V +GA MVGS T+ +GD VK+G+E GYF FGGST++ +FE + D+DL+
Sbjct: 930 FGRVMVVCVGAMMVGSTVITRNEGDEVKRGEELGYFKFGGSTIVVLFEPGRMVWDEDLVQ 989
Query: 400 NSTRPLETLVSVGMRLG 350
NS PLETL+ VGM +G
Sbjct: 990 NSLLPLETLIRVGMSVG 1006
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,138,003
Number of Sequences: 1393205
Number of extensions: 10490181
Number of successful extensions: 29235
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 28296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29175
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
