Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001356A_C01 KMC001356A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_702824.1| hypothetical protein [Plasmodium falciparum 3D7... 34 1.0
gb|EAA22347.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.2
gb|EAA16959.1| DNA-directed RNA polymerase, beta subunit [Plasmo... 31 6.5
gb|EAA22055.1| SAM-dependent methyltransferase related to tRNA(u... 31 8.5
>ref|NP_702824.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498240|emb|CAD49211.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4605
Score = 33.9 bits (76), Expect = 1.0
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +1
Query: 199 FFFSDLSCQWMYSTNEIIIQ*RYRLNFQFFFFR*ALNFQMVLLIFTVDHNTNKTYMTPSY 378
FFFS L +++ N + + + +F F+F + L + + L+F ++ N K Y +Y
Sbjct: 3267 FFFSTLKSKYLTYVNTKYVYFKEKKHFYFYFPKFLLINKKLKLLFKINENVCKYYSIRNY 3326
Query: 379 INL 387
I+L
Sbjct: 3327 IHL 3329
>gb|EAA22347.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 736
Score = 32.7 bits (73), Expect = 2.2
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 182 FFLCCISSSLIFHVNGCIPQTKS*FNEDID*TSNSFSLDKH 304
FF+CC+ S H N CIP K+ N D +S++F ++K+
Sbjct: 569 FFICCVLSINEIHTNLCIPFMKN--NSYHDISSSNFGMEKN 607
>gb|EAA16959.1| DNA-directed RNA polymerase, beta subunit [Plasmodium yoelii
yoelii]
Length = 1470
Score = 31.2 bits (69), Expect = 6.5
Identities = 13/57 (22%), Positives = 30/57 (51%), Gaps = 6/57 (10%)
Frame = -3
Query: 405 NNEVITEVYVTGGHIRLVSVMINSK------DEENHLEVQCLSKEKELEVQSISSLN 253
+ ++ ++ GH++++ +I K +EEN + + CL + + + S+S LN
Sbjct: 224 DESILGGFFIVSGHLKIIRYVICPKYNAILLNEENKVHINCLLSDNSVFINSLSYLN 280
>gb|EAA22055.1| SAM-dependent methyltransferase related to
tRNA(uracyl-5-)-methyltransferase [Plasmodium yoelii
yoelii]
Length = 600
Score = 30.8 bits (68), Expect = 8.5
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = -3
Query: 477 FFNHFIFCICF-----PYGKEYGEVKIMLNNEVIT-----EVYVTGGHIRLVSVMINSKD 328
FF + +FC+CF P+G YGE+ + + + + + L + IN K
Sbjct: 8 FFFNSVFCVCFVHNLDPHG--YGEIALYVTKHYFLLFLKFFLLIPDEQVNLKVLDINKKK 65
Query: 327 EENHLEVQCLSKEKELEV 274
++ +V C +K+ + E+
Sbjct: 66 KKITFQVLCKNKKSKYEI 83
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,920,094
Number of Sequences: 1393205
Number of extensions: 7717166
Number of successful extensions: 18607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18600
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
