Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001351A_C01 KMC001351A_c01
(395 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568313.1| ubiquitin-fusion degradation protein-like; prot... 58 2e-08
pir||T51518 ubiquitin-fusion degradation protein-like - Arabidop... 58 2e-08
ref|XP_137497.1| similar to NPC1 (Niemann-Pick disease, type C1,... 32 1.9
pir||T14576 nosA protein - slime mold (Dictyostelium discoideum)... 31 4.3
ref|NP_037521.1| NPC1 (Niemann-Pick disease, type C1, gene)-like... 31 4.3
>ref|NP_568313.1| ubiquitin-fusion degradation protein-like; protein id: At5g15400.1
[Arabidopsis thaliana]
Length = 1037
Score = 58.2 bits (139), Expect = 2e-08
Identities = 32/54 (59%), Positives = 40/54 (73%)
Frame = -3
Query: 393 HLTADMLIPDVELKARIEEFVRSQEMKKHGEGLSIQSSSKATIQTPNGEKMLID 232
HLT+DMLIPD+ELKA+I+EFV+S + KK G SS+K IQT N + MLID
Sbjct: 987 HLTSDMLIPDIELKAKIDEFVKSHQSKKRTSG--EDSSNKERIQTTNSD-MLID 1037
>pir||T51518 ubiquitin-fusion degradation protein-like - Arabidopsis thaliana
gi|9755795|emb|CAC01739.1| ubiquitin-fusion degradation
protein-like [Arabidopsis thaliana]
Length = 1038
Score = 58.2 bits (139), Expect = 2e-08
Identities = 32/54 (59%), Positives = 40/54 (73%)
Frame = -3
Query: 393 HLTADMLIPDVELKARIEEFVRSQEMKKHGEGLSIQSSSKATIQTPNGEKMLID 232
HLT+DMLIPD+ELKA+I+EFV+S + KK G SS+K IQT N + MLID
Sbjct: 988 HLTSDMLIPDIELKAKIDEFVKSHQSKKRTSG--EDSSNKERIQTTNSD-MLID 1038
>ref|XP_137497.1| similar to NPC1 (Niemann-Pick disease, type C1, gene)-like 1 [Homo
sapiens] [Mus musculus] gi|25056582|ref|XP_204570.1|
similar to NPC1 (Niemann-Pick disease, type C1,
gene)-like 1 [Homo sapiens] [Mus musculus]
Length = 1333
Score = 32.0 bits (71), Expect = 1.9
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 278 LLLCMLSPSPCFFIS*DLTNSSIRAFSSTSGISI 379
+LLC LS + CFF+ + ++R F+ TSG++I
Sbjct: 747 MLLCSLSEAICFFLGALTSMPAVRTFALTSGLAI 780
>pir||T14576 nosA protein - slime mold (Dictyostelium discoideum)
gi|2827469|gb|AAC34746.1| NOSA [Dictyostelium discoideum]
Length = 1089
Score = 30.8 bits (68), Expect = 4.3
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = -3
Query: 393 HLTADMLIPDVELKARIEEFVRSQE 319
HLT +MLI DVE K +I+E++ S++
Sbjct: 1063 HLTPEMLIDDVETKKKIDEWLASKK 1087
>ref|NP_037521.1| NPC1 (Niemann-Pick disease, type C1, gene)-like 1 [Homo sapiens]
gi|6643036|gb|AAF20396.1|AF192522_1 Niemann-Pick C3
protein; NPC3 [Homo sapiens]
Length = 1359
Score = 30.8 bits (68), Expect = 4.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 278 LLLCMLSPSPCFFIS*DLTNSSIRAFSSTSGISI 379
+LLC LS + CFF+ ++R F+ TSG+++
Sbjct: 747 MLLCSLSEAICFFLGALTPMPAVRTFALTSGLAV 780
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291,735,236
Number of Sequences: 1393205
Number of extensions: 5447883
Number of successful extensions: 10070
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10069
length of database: 448,689,247
effective HSP length: 107
effective length of database: 299,616,312
effective search space used: 7190791488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
