Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001346A_C01 KMC001346A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192418.1| 3(2),5-BISPHOSPHATE NUCLEOTIDASE -like protein;... 65 6e-10
pir||JQ1867 hypothetical 9.2K protein - bovine adenovirus 3 32 4.5
ref|NP_503197.1| Putative plasma membrane membrane protein famil... 32 7.7
ref|NP_107384.1| gamma-glutamyltranspeptidase [Mesorhizobium lot... 31 10.0
>ref|NP_192418.1| 3(2),5-BISPHOSPHATE NUCLEOTIDASE -like protein; protein id:
At4g05090.1, supported by cDNA: 158702. [Arabidopsis
thaliana] gi|25349659|pir||A85064 hypothetical protein
AT4g05090 [imported] - Arabidopsis thaliana
gi|7267268|emb|CAB81051.1| 3'(2'), 5'-BISPHOSPHATE
NUCLEOTIDASE-like protein [Arabidopsis thaliana]
gi|21553719|gb|AAM62812.1| 3(2),5-BISPHOSPHATE
NUCLEOTIDASE-like protein [Arabidopsis thaliana]
Length = 397
Score = 65.1 bits (157), Expect = 6e-10
Identities = 29/47 (61%), Positives = 38/47 (80%)
Frame = -2
Query: 378 QVTDWKGSEIDLAADEVGRRIIFPSGGVLVTNGHLHNQILHIISQTS 238
+VTDW+G EI+L D+ RR+IFP+GGV+V+NG LHNQIL +IS S
Sbjct: 348 KVTDWEGDEINLEEDQSERRLIFPAGGVVVSNGSLHNQILEMISSAS 394
>pir||JQ1867 hypothetical 9.2K protein - bovine adenovirus 3
Length = 88
Score = 32.3 bits (72), Expect = 4.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 269 LCKWPLVTRTPPEGNIIRRPTSSAARSISLPFQSVTW 379
LC+WP TR P + + PT SA+ S S P +T+
Sbjct: 52 LCEWPYTTRELPAASAVPVPTPSASPSSSRPSVPLTF 88
>ref|NP_503197.1| Putative plasma membrane membrane protein family member, with at
least 9 transmembrane domains, of bilaterial origin
(51.6 kD) [Caenorhabditis elegans]
gi|7495020|pir||T25475 hypothetical protein B0554.5 -
Caenorhabditis elegans gi|1703538|gb|AAB37612.1|
Hypothetical protein B0554.5 [Caenorhabditis elegans]
Length = 468
Score = 31.6 bits (70), Expect = 7.7
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 319 PPTNFICCKIYFTAFPVCYLVKLNSYY 399
P TN I I+FTAFP+ +L NSYY
Sbjct: 79 PKTNLIIASIFFTAFPLGFLF-TNSYY 104
>ref|NP_107384.1| gamma-glutamyltranspeptidase [Mesorhizobium loti]
gi|14026573|dbj|BAB53170.1| gamma-glutamyltranspeptidase
[Mesorhizobium loti]
Length = 528
Score = 31.2 bits (69), Expect = 10.0
Identities = 16/35 (45%), Positives = 19/35 (53%)
Frame = -2
Query: 369 DWKGSEIDLAADEVGRRIIFPSGGVLVTNGHLHNQ 265
DW EIDL+ADE RI P+G G +H Q
Sbjct: 156 DWADPEIDLSADEHAARIFLPAGQA-PKAGDIHRQ 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,102,775
Number of Sequences: 1393205
Number of extensions: 9347301
Number of successful extensions: 17060
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17053
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
